Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq8437 149 5e-31 >seq8437 Length=12918 Score = 149 bits (164), Expect = 5e-31 Identities = 426/648 (66%), Gaps = 8/648 (1%) Strand=Plus/Minus Query 18543 AAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAAT 18602 ||| | ||||| ||||| | ||||| | || || ||||| ||| |||| |||| Sbjct 6350 AAAGGAGATCGTACAGGCACTGGAACCTATTCGTTGTTTGGTGCCCAAATGCGATTCAAT 6291 Query 18603 TTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAA 18662 | | | ||||||| | | || |||||||| || |||||||| | ||| |||| Sbjct 6290 ATCAGGGAATCATTTCCTTTGCTCACGACAAAGCGCGTGTTTTGGAGAGGCGTATTGGAG 6231 Query 18663 GAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATA 18722 || |||| ||||| || ||| || | | || |||||| | | ||| | || Sbjct 6230 GAACTGTTGTGGTTCATAAAGGGGAGTACTAACGCAAAGGAACTCTCGGATAAGAAAGTA 6171 Query 18723 CACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGA 18782 ||||| |||||| | |||| || | ||||||| | || | ||| || | | Sbjct 6170 CACATTTGGGATGCAAACGGCTCTAAAGAATTTCTGAGTAAGTCTGGGTTTTCAGATCGC 6111 Query 18783 CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATAT 18842 | ||| |||||||| || |||| || || || ||| | ||||||||||| ||||| Sbjct 6110 GAAGAGGGCGACCTTGGTCCGGTTTATGGATTTCAATGGCGCCATTTTGGAGCTGAATAC 6051 Query 18843 AAAGACTGTCAATCAAACTATTTACAGCAA--GGAATCGATCAGCT-GCAAACTGTTATA 18899 ||||| || | | || || | || || | || ||||| || | |||||| Sbjct 6050 CAAGACATGCATGCCGATTAC--ACTGGAAAAGGTGTTGACCAGCTTGCCGA-TGTTATC 5994 Query 18900 GATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAG 18959 | || || || | || || | ||| | || || || || | | |||||| | ||| Sbjct 5993 AACACGATACAATCCAATCCGAATAGCAGGCGGATTATAATGTGCGCATGGAATGCCAAG 5934 Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 |||||||| ||||| | |||| || ||||| | |||| || ||||| ||| | | Sbjct 5933 GATATCCCTCAAATGGCATTACCCCCGTGTCATGCTCTATGCCAATTTTATGTTTCTGAT 5874 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || || || | || || |||| | || |||||| | || | |||||| Sbjct 5873 GGAGAGCTGTCTTGTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGGCATCCCGTTC 5814 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTT-AAAAC 19138 || || || | ||| | | || || || || | || |||||||| | | || ||| | Sbjct 5813 AATATCGCCAGCTATTCCTTACTCACGTATATGATTGCTCATGTTAC-GAATTTGAAACC 5755 Query 19139 CGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 ||| || || | ||||| || || ||||| ||| ||||| |||||| Sbjct 5754 CGGTGACTTCGTACATACTATTGGTGATGCTCATGTTTACACGAATCA 5707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398919048615255