Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8437 215 4e-51 >seq8437 Length=12918 Score = 215 bits (238), Expect = 4e-51 Identities = 454/673 (67%), Gaps = 8/673 (1%) Strand=Plus/Plus Query 101597 GCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTA 101656 || || || ||||| || | || || || || | | || | ||| || |||||||| Sbjct 5611 GCCTTGAAATCATCGATTGAAGACACGTTCCTCGTTATGCTCAATGTCGGGAACGGTCTT 5670 Query 101657 GGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCT 101716 || ||| ||| || || | || |||| ||||| || | |||||||| Sbjct 5671 GGCTCACGCTTCAGTTGTTCTTCGATTGCTTCAACGTGATTCGTGTAAACATGAGCATCA 5730 Query 101717 CCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTT 101776 || |||||||| | || || || || | ||| || |||||||||||||| | || Sbjct 5731 CCAATAGTATGTACGAAGTCACCGGGTTTCAAATTCGTAACATGAGCAATCATATACGTG 5790 Query 101777 AAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGA 101836 | | |||||||| || || || || || | ||||| ||||| || || |||| |||| Sbjct 5791 AGTAAGGAATAGCTGGCGATATTGAACGGGATGCCTAAGCCCATGTCTGCAGATCGTTGA 5850 Query 101837 TACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGC 101896 || || ||||| || |||| ||||||| | ||||||||||| | || ||||||| || Sbjct 5851 TAAAGCTGACAAGACAGCTCTCCATCAGAAACATAAAATTGGCATAGAGCATGACACGGG 5910 Query 101897 GGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCC---TTCTA 101953 || || |||||| ||| || || ||||||| || ||||||| |||| | ||| Sbjct 5911 GGTAATGCCATTTGAGGGATATCCTTGGCATTCCATGCGCACATTATAATCCGCCTGCTA 5970 Query 101954 TCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCT 102013 | | || || | || ||| || | || | | | |||||||| |||| ||| Sbjct 5971 T---TCGGATTGGATTGTATCGTGTTGATAACATCGGCAAGCTGGTCAACACCTTTTCCA 6027 Query 102014 TTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATAC 102073 | |||||| | ||| ||||| ||||| ||||| | ||| ||||||||||| Sbjct 6028 GTGTAATCGGCATGCATGTCTTGGTATTCAGCTCCAAAATGGCGCCATTGAAATCCATAA 6087 Query 102074 ACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTA 102133 || || ||||| || || || || | || |||| ||| ||| | |||| | || Sbjct 6088 ACCGGACCAAGGTCGCCCTCTTCGCGATCTGAAAACCCAGACTTACTCAGAAATTCTTTA 6147 Query 102134 GATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTTTGCTGTCAGTAGA 102192 || || || |||||||||||||| || | || || | |||||| || |||| Sbjct 6148 GAGCCGTTTGCATCCCAAATGTGTACTTTCTTATCCGAGAGTTCCTTTGC-GTTAGTACT 6206 Query 102193 TCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 || | || |||||||||||||| || | || ||||||||||| || | ||| || || Sbjct 6207 CCCCTTTATGAACCACAACAGTTCCTCCAATACGCCTCTCCAAAACACGCGCTTTGTCGT 6266 Query 102253 TAAAAGTGGAAAT 102265 | | |||||| Sbjct 6267 GAGCAAAGGAAAT 6279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360722258137889