Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1613 131 2e-25 seq114234 125 7e-24 seq114236 114 1e-20 seq73522 84.2 2e-11 >seq1613 Length=19885 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || ||||||||||| | || || || || | Sbjct 155 ATGCAAATCTTTGTCAAGACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGGCTTCT 214 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| | ||||| | ||||| || || ||||| | || || Sbjct 215 GACACCATCGATAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATCCCTCCCGATCAA 274 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| || |||| || | |||||||||| |||||||||| Sbjct 275 CAGCGTCTCATCTTCGCTGGCAAGCAATTGGAAGATGGCCGCACCCTCAGCGACTACAAC 334 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| | || |||| | || ||||| |||||||| || Sbjct 335 ATCCAAAAGGAATCGACTTTGCACTTGGTCTTGCGATTGAGGGGTGG 381 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| ||||| || || || ||||| | || ||||||||| | Sbjct 611 ATGCAAATCTTCGTAAAAACCCTCACAGGAAAGACGATCACGCTTGAGGTCGAAGCCTCG 670 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| || ||||| || | || || Sbjct 671 GACACCATCGATAACG-TCAAGCAGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 729 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | || || || | ||||||||| Sbjct 730 GCAGCGTCTAATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTAGCGACTACAA 789 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || || | || || ||||| || Sbjct 790 CATTCAAAAAGAATCTACTCTTCATCTTGT 819 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 ||| | ||||| | ||||| || ||||| || | || ||||| || ||||||| ||| Sbjct 5 AAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTCTCATCTTCGCT 64 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| || |||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 65 GGCAAGCAATTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAGGAATCCACT 124 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| | || | || ||||| || || Sbjct 125 TTGCACTTGGTTCTACGATTGAGAGGTGG 153 >seq114234 Length=910 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || ||||||||||| || | || ||||| || | Sbjct 71 AATGCAAATCTTCGTCAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 130 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | ||||| | || |||| || ||||| ||||| || | || || Sbjct 131 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 190 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| || |||| |||| ||||| |||| ||||||||| Sbjct 191 ACAGCGTCTCATCTTCGCCGGCAAGCAATTGGAAGACGGCCGCACTCTCAGCGACTACAA 250 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || ||| | || |||| Sbjct 251 CATCCAAAAAGAGTCTACTTTGCA 274 Score = 113 bits (124), Expect = 5e-20 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | || || ||||| || ||| |||| ||||| || | Sbjct 299 AATGCAAATCTTCGTCAANACTTTGACCGGTAAAACTATTACCCTCGAAGTCGAGGCTTC 358 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | ||| | |||| | |||||||| ||||| || | || || Sbjct 359 AGACACTATCGATAATGTGAAGCAGAAAANCCAGGACAAAGAAGGCATTCCTCCCGATCA 418 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| || |||| |||| || || |||| ||||||||| Sbjct 419 GCAGCGTCTCATCTTNGCNGGCAAGCAATTGGANGACGGCCGNACNCTCAGCGACTACAA 478 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || || | || |||| Sbjct 479 CATCCANAANGANTCNACTTTGCA 502 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || ||||||||||| || | || ||||| || | Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | ||||| | || |||| || ||||| ||||| || | || || Sbjct 587 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 646 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| || |||| || | ||||| |||| ||||||||| Sbjct 647 ACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTACAA 706 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || ||| | || |||| Sbjct 707 CATCCAAAAAGAGTCTACTTTGCA 730 >seq114236 Length=889 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | || |||||||| || ||| |||| ||||| || | Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | ||| | ||||| | ||||| || ||||| || | || || Sbjct 531 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 472 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| || |||| |||| ||||| || | ||||||||| Sbjct 471 GCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTACAA 412 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || ||| | || |||| | || || | ||||| || || Sbjct 411 CATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGG 364 Score = 109 bits (120), Expect = 6e-19 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || ||||| ||||| | || ||||| || | Sbjct 362 ATGCAAATCTTNGTCAAGACTTTGACCGGTAAAACTATCACTNTGGAGGTCGAGGCTTCT 303 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || || |||| || ||||| ||||| || | || || Sbjct 302 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 243 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || || ||| |||| |||| |||||||| | |||||||||| Sbjct 242 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTNAGCGACTACAAC 183 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 182 ATCCAGAAGGA 172 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || ||||| ||||| | || ||||| || | Sbjct 818 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAAACTATCACTTTGGAGGTCGAGGCTTCT 759 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || || |||| || ||||| ||||| || | || || Sbjct 758 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 699 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || || ||| |||| |||| |||||||| | |||||||||| Sbjct 698 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTAAGCGACTACAAC 639 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 638 ATCCAGAAGGA 628 >seq73522 Length=1302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| || | ||||| || || || || |||||||| || || ||| ||| Sbjct 274 GAGCCGCTCTTGAGAGAGAATCCGAATCGCTTTGTCATTTTCCCGATCCAGTACAATGAC 333 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| | |||||||| || |||||||| || ||||||||||| || |||||| Sbjct 334 ATTTGGAGGATGTACAAGAAAGCCGAGGCTTCTTTCTGGACCGTGGAAGAGGTG 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514445476006640