Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq8437 232 5e-56 >seq8437 Length=12918 Score = 232 bits (256), Expect = 5e-56 Identities = 435/631 (69%), Gaps = 14/631 (2%) Strand=Plus/Plus Query 97005 TGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCAC 97064 ||| ||||| || || || ||| | || || ||| || || |||| ||||||| Sbjct 5655 TGTCGGGAACGGTCTTGGCTCACGCTTCAGTTGTTCTTCGATTGCTTCAACGTGATTCGT 5714 Query 97065 ATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATG 97124 |||| |||||||| || | ||| || | || || || || |||| || ||||| Sbjct 5715 GTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTCAAATTCGTAACATG 5774 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 || |||||| | || | || |||||||| || || || || || | |||| ||||| Sbjct 5775 AGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGGATGCCTAAGCCCAT 5834 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 || || |||| |||||| | |||||| || |||| ||||||| | |||||||| || | Sbjct 5835 GTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAAACATAAAATTGGCA 5894 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 | ||||||| ||||| || ||||||| || | ||| | ||||||| || ||||| Sbjct 5895 TAGAGCATGACACGGGGGTAATGCCATTTGAGGGATATCCTTGGCATTCCATGCGCACAT 5954 Query 97305 CAACATTC---TTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTA--TCTGCTTTAAT 97359 | || | | |||| | || || | ||||| || || || | || || | Sbjct 5955 TATAATCCGCCTGCTAT---TCGGATTGGATTGTATCGTGTTGATAACATCGGCA--AGC 6009 Query 97360 TGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGC 97419 || ||||| |||| |||| |||| | | | |||| ||||| ||||||||||| Sbjct 6010 TGGTCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTTGGTATTCAGCTCCAAAATGG 6069 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGC 97479 | |||||| ||||||||||| || |||||||| || ||||| | ||| | || ||| | Sbjct 6070 CGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTTCGCGATCTGAAAACCCAGAC 6129 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCAC-ACCAGATGCTGCAAG 97538 ||| | | | |||| || ||||||||||||||||| || | || | | || Sbjct 6130 TTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATGTGTACTTTCTTAT-CCGAGAG 6188 Query 97539 CT-CTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCC 97597 | |||||| || |||| || | || |||||||||| ||| |||| || ||||||| Sbjct 6189 TTCCTTTGC-GTTAGTACTCCCCTTTATGAACCACAACAGTTCCTCCAATACGCCTCTCC 6247 Query 97598 AAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 |||| || | ||| || || | | |||||| Sbjct 6248 AAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346276240926230