Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1613 129 9e-25 seq114234 127 3e-24 seq114236 116 6e-21 seq80631 111 2e-19 seq74517 111 2e-19 seq8437 111 2e-19 >seq1613 Length=19885 Score = 129 bits (142), Expect = 9e-25 Identities = 178/248 (72%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || || || ||||| || ||| | || | || || Sbjct 382 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAAACCATTACTCTTGAAGTCGAGGCTTC 441 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||||||||||| ||||||||||| || || |||||||| Sbjct 442 CGACACCATCGATAATGTCAAGCAGAAAATTCAGGATAAAGAAGGGATTCCTCCTGATCA 501 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| || || || || ||||| |||||| | || || | || || || Sbjct 502 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGCCGTACCCTCAGTGACTACAA 561 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||| ||||||||||| |||||||| ||||| | | | ||||||| || ||| || Sbjct 562 TATCCAAAAAGAATCTACTTTGCACTTGGTCCTGAGACTGAGAGGTGGCATGCAAATCTT 621 Query 124777 CATAAAAA 124784 | |||||| Sbjct 622 CGTAAAAA 629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || || ||||| || || || || | ||| | ||||| Sbjct 611 ATGCAAATCTTCGTAAAAACCCTCACAGGAAAGACGATCACGCTTGAGGTCGAAGCCTCG 670 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||| || ||||| || ||||| || || || ||||| Sbjct 671 GACACCATCGATAACGTCAAGCAGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 730 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || | || || || || || || || | || ||| | || || |||| || || || Sbjct 731 CAGCGTCTAATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTAGC-GACTACAA 789 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| ||| | ||| | || | ||| | ||||| || Sbjct 790 CATTCAAAAAGAATCTACTCTTCATCTTGTACTTCGTCTCCGAGGCGG 837 >seq114234 Length=910 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || | ||||||||||| || ||| | ||| | || || Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || ||||| ||||||||||||||||| || || || ||||| Sbjct 587 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 646 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| || || ||||| || ||| | || || | || || || Sbjct 647 ACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTACAA 706 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || |||||||| || |||||||| ||||| Sbjct 707 CATCCAAAAAGAGTCTACTTTGCACTTGGT 736 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || | ||||||||||| || ||| | ||| | || || Sbjct 71 AATGCAAATCTTCGTCAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 130 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || ||||| ||||||||||||||||| || || || ||||| Sbjct 131 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 190 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || || ||||| || || | || || | || || || Sbjct 191 ACAGCGTCTCATCTTCGCCGGCAAGCAATTGGAAGACGGCCGCACTCTCAGCGACTACAA 250 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || |||||||| || |||||||| ||||| Sbjct 251 CATCCAAAAAGAGTCTACTTTGCACTTGGT 280 >seq114236 Length=889 Score = 116 bits (128), Expect = 6e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| ||| | ||| | || || | Sbjct 818 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAAACTATCACTTTGGAGGTCGAGGCTTCT 759 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||| ||||||||||||||||| || || || |||||| Sbjct 758 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 699 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| || || || || || || || || | || || || || || || Sbjct 698 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTAAGCGACTACAAC 639 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || || ||||| |||||||| ||||| Sbjct 638 ATCCAGAAGGAATCGACTTTGCACTTGGT 610 Score = 109 bits (120), Expect = 8e-19 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || |||||||| ||| | ||| | || || | Sbjct 362 ATGCAAATCTTNGTCAAGACTTTGACCGGTAAAACTATCACTNTGGAGGTCGAGGCTTCT 303 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||| ||||||||||||||||| || || || |||||| Sbjct 302 GACACCATCGAAAATGTAAAATCGAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 243 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| || || || || || || || || | || || | || || || Sbjct 242 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTNAGCGACTACAAC 183 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || || ||||| |||||||| ||||| Sbjct 182 ATCCAGAAGGAATCGACTTTGCACTTGGT 154 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| | |||||||||||||| || | || | || || Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || |||||||| || || || ||||| || || || ||||| Sbjct 531 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 472 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || ||||| || || | || || | || || || Sbjct 471 GCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTACAA 412 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || |||||||| |||||| | | || |||| ||||| Sbjct 411 CATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGGTAT 361 >seq80631 Length=8887 Score = 111 bits (122), Expect = 2e-19 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 202757 TCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATT 202816 ||||| |||||||| | | ||| || | ||| |||| | | ||| ||||| || | Sbjct 3482 TCAACGTCAAATTTTCTTTGACAACCCTTGTAATTCATGAAGCGAATCTTACCGAAAACC 3541 Query 202817 GGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATAT 202876 ||| ||| |||| || ||||||||| ||||| || |||||||| ||||||||||| Sbjct 3542 TCTCTCTCTCTCCACCCTTGATCATGAATGCCACAGATCGACCACATGCATCCAACATAC 3601 Query 202877 CCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAAT 202936 || ||||||||||| || || | ||| ||||| || | | | Sbjct 3602 CCGTTTGGATCACGGCCGTCAAGTTCATACTTATCGTTCAGCTTGATTGCAATCTCGAGA 3661 Query 202937 GCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATAT 202996 || | ||| ||||||| | ||| || | |||||| || ||||| ||||| || | | Sbjct 3662 GCCTTTTCCGGTGATTCAGACCACTCGAGTATTTTCTTCGCCCAGTACATCCTCATGAAA 3721 Query 202997 CCATGCATTTTACC 203010 ||||||||||| || Sbjct 3722 CCATGCATTTTGCC 3735 >seq74517 Length=5657 Score = 111 bits (122), Expect = 2e-19 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 202757 TCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATT 202816 ||||| |||||||| | | ||| || | ||| |||| | | ||| ||||| || | Sbjct 4159 TCAACGTCAAATTTTCTTTGACAACCCTTGTAATTCATGAAGCGAATCTTACCGAAAACC 4218 Query 202817 GGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATAT 202876 ||| ||| |||| || ||||||||| ||||| || |||||||| ||||||||||| Sbjct 4219 TCTCTCTCTCTCCACCCTTGATCATGAATGCCACAGATCGACCACATGCATCCAACATAC 4278 Query 202877 CCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAAT 202936 || ||||||||||| || || | ||| ||||| || | | | Sbjct 4279 CCGTTTGGATCACGGCCGTCAAGTTCATACTTATCGTTCAGCTTGATTGCAATCTCGAGA 4338 Query 202937 GCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATAT 202996 || | ||| ||||||| | ||| || | |||||| || ||||| ||||| || | | Sbjct 4339 GCCTTTTCCGGTGATTCAGACCACTCGAGTATTTTCTTCGCCCAGTACATCCTCATGAAA 4398 Query 202997 CCATGCATTTTACC 203010 ||||||||||| || Sbjct 4399 CCATGCATTTTGCC 4412 >seq8437 Length=12918 Score = 111 bits (122), Expect = 2e-19 Identities = 371/571 (65%), Gaps = 11/571 (2%) Strand=Plus/Plus Query 205398 ATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAAT 205457 ||| |||| ||||||| |||| | || ||| ||||| ||||| || | ||| ||||| Sbjct 5721 ATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTCAAATTCGTAACATGAGCAAT 5780 Query 205458 CATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGC 205517 |||||| || | ||| ||| || || | ||| || || | ||||| ||||| || || Sbjct 5781 CATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGGATGCCTAAGCCCATGTCTGC 5840 Query 205518 TGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACAAA 205577 |||| |||||| | ||||| | || | | || | | |||| |||||| | Sbjct 5841 AGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAA---ACATAAAATTGGCATAG 5897 Query 205578 ACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATAT 205637 | |||||| || |||| |||| | | ||| | | |||||| || | ||| Sbjct 5898 AGCATGACACGGGGGTAATGCCATTTGAGGGATATCCTTGGCATTCCATGCGCACATTAT 5957 Query 205638 TATATTTCT-AGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATCAA 205696 || || |||| || || || ||| | || |||| || | | || |||| Sbjct 5958 AATCCGCCTGCTATTC-GGATTGGATTGTATCGTGTTGATAACATCGGCAAGCTGGTCAA 6016 Query 205697 ATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATT 205756 |||| || |||| | || ||| || |||| ||| |||||||| ||||||| Sbjct 6017 CACCTTTTCCAGTGTAATCGGCATGCATGTCTTGGTATTCAGCTCCAAAATGGCGCCATT 6076 Query 205757 GAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGttttttta 205816 |||| |||||||| ||||| | || || |||| | ||| ||| ||| || | | Sbjct 6077 GAAATCCATAAACCGGACCAAGGTCGCCCTCTTCGCGATCTGAAAACCCAGACTTACTCA 6136 Query 205817 tatattttaatgatccattttcatcccaaatatggattcctttatt-ttttaGAAT--AT 205873 | ||| | || || ||| |||||||||| || | |||| || | ||| | | Sbjct 6137 GAAATTCTTTAGAGCCGTTTGCATCCCAAATGTG---TACTTTCTTATCCGAGAGTTCCT 6193 Query 205874 TTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACA 205933 ||| ||||| || ||| ||||| || | ||| || | | ||||||||||||| Sbjct 6194 TTGCGTTAGTACTCCCCTTTATGAACCACAACAGTTCCTCCAATACGCCTCTCCAAAACA 6253 Query 205934 TTGATTTTGTTGTAAATAATGGAAATGAATC 205964 ||||| || | || |||||||| || Sbjct 6254 CGCGCTTTGTCGTGAGCAAAGGAAATGATTC 6284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754321503395200