Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq80631 132 9e-26 seq74517 132 9e-26 >seq80631 Length=8887 Score = 132 bits (146), Expect = 9e-26 Identities = 224/322 (70%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 || || |||| ||| |||| || || | || |||||||| | || ||||||||| Sbjct 3803 AAAAATTCGAGCAAGGCAAAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGG 3744 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 || || ||||||||| |||| | | ||||| ||||| ||||| ||||| || | Sbjct 3743 TGCACACCGGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGT 3684 Query 189537 GGACTAGAACACCTGAAGACGCT-TTGAGTTATAGTATCTATTTGAACAACAAGTACGAA 189595 || || | |||| ||| | ||| | ||| | | ||| | ||||| | ||||| ||| Sbjct 3683 GGTCTGAATCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAA 3625 Query 189596 CTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACAC 189655 || |||||| ||||| ||||| || || || || |||||||| || || || | || Sbjct 3624 CTTGACGGCCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCAT 3565 Query 189656 GATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGT 189715 ||| || ||||| ||| ||| | | || || ||||| | | |||||||| || || Sbjct 3564 GATCAAGGGTGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGT 3505 Query 189716 TCTAAGAAGAAATTTGATGTTG 189737 | | | | |||||||| |||| Sbjct 3504 TGTCAAAGAAAATTTGACGTTG 3483 >seq74517 Length=5657 Score = 132 bits (146), Expect = 9e-26 Identities = 224/322 (70%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 || || |||| ||| |||| || || | || |||||||| | || ||||||||| Sbjct 4480 AAAAATTCGAGCAAGGCAAAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGG 4421 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 || || ||||||||| |||| | | ||||| ||||| ||||| ||||| || | Sbjct 4420 TGCACACCGGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGT 4361 Query 189537 GGACTAGAACACCTGAAGACGCT-TTGAGTTATAGTATCTATTTGAACAACAAGTACGAA 189595 || || | |||| ||| | ||| | ||| | | ||| | ||||| | ||||| ||| Sbjct 4360 GGTCTGAATCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAA 4302 Query 189596 CTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACAC 189655 || |||||| ||||| ||||| || || || || |||||||| || || || | || Sbjct 4301 CTTGACGGCCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCAT 4242 Query 189656 GATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGT 189715 ||| || ||||| ||| ||| | | || || ||||| | | |||||||| || || Sbjct 4241 GATCAAGGGTGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGT 4182 Query 189716 TCTAAGAAGAAATTTGATGTTG 189737 | | | | |||||||| |||| Sbjct 4181 TGTCAAAGAAAATTTGACGTTG 4160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921810400745560