Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq114234 98.7 1e-15 seq1613 98.7 1e-15 >seq114234 Length=910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| ||||| | ||||| || |||||||| ||||| || || || || Sbjct 756 TTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGC 697 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| || ||||| || || ||||| |||| | || ||||| |||| Sbjct 696 TGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAG 637 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 636 GAATGCCTTCTTTATCTTG 618 >seq1613 Length=19885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | ||||| || |||||||||||||| ||||| || || Sbjct 609 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTG 550 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || ||||| || ||||| || || | | ||||||||| |||||| Sbjct 549 AGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 490 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 489 ATCCCTTCTTTATCCTG 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742409818522880