Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq8437 219 3e-52 >seq8437 Length=12918 Score = 219 bits (242), Expect = 3e-52 Identities = 438/648 (68%), Gaps = 6/648 (1%) Strand=Plus/Minus Query 19971 AAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAA 20030 |||| |||||| || || |||||||| | || | ||||| ||| |||| || Sbjct 6351 AAAAGGAGATCGTACAGGCACTGGAACCTATTCGTTGTTTGGTGCCCAAATGCGATTCAA 6292 Query 20031 CTTGAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGA 20090 | || | |||||| || | || || || || || ||||||| |||||| | || Sbjct 6291 TATCAGGGAATCATTTCCTTTGCTCACGACAAAGCGCGTGTTTTGGAGAGGCGTATTGGA 6232 Query 20091 AGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGT 20150 || | || ||||| || || || || || | | || || || || ||| Sbjct 6231 GGAACTGTTGTGGTTCATAAAGGGGAGTACTAACGCAAAGGAACTCTCGGATAAGAAAGT 6172 Query 20151 TAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAA---TGGATTTGACAA 20207 | |||||| ||| | || ||||| ||||| | || || ||| ||| | Sbjct 6171 ACACATTTGGGATGCAAACGGCTCTAAAGAATTTCTG---AGTAAGTCTGGGTTTTCAGA 6115 Query 20208 CCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGA 20267 || ||||||| || | ||||| || ||||||||||||||| | |||||||||||||| Sbjct 6114 TCGCGAAGAGGGCGACCTTGGTCCGGTTTATGGATTTCAATGGCGCCATTTTGGAGCTGA 6055 Query 20268 ATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTAT 20327 ||| |||||| | | |||| |||| |||| || || || | ||||||| Sbjct 6054 ATACCAAGACATGCATGCCGATTACACTGGAAAAGGTGTTGACCAGCTTGCCGATGTTAT 5995 Query 20328 TAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAA 20387 || || || | || || || ||| | ||||| | ||||| ||||| || || Sbjct 5994 CAACACGATACAATCCAATCCGAATAGCAGGCGGATTATAATGTGCGCATGGAATGCCAA 5935 Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 ||| | ||| |||||| || || || |||||| |||||||||||||| ||| || | Sbjct 5934 GGATATCCCTCAAATGGCATTACCCCCGTGTCATGCTCTATGCCAATTTTATGTTTCTGA 5875 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| ||||| | ||||||||||| || || ||||| | || | || || Sbjct 5874 TGGAGAGCTGTCTTGTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGGCATCCCGTT 5815 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAAC 20567 |||||| || || ||| | | || |||||||||||||| |||||||| |||| ||| | Sbjct 5814 CAATATCGCCAGCTATTCCTTACTCACGTATATGATTGCTCATGTTACGAATTTGAAACC 5755 Query 20568 GGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615 |||||||| || || || || || || || ||| ||||| ||||| Sbjct 5754 CGGTGACTTCGTACATACTATTGGTGATGCTCATGTTTACACGAATCA 5707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398599517157355