Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1613 140 3e-28 seq114234 132 4e-26 seq114236 131 1e-25 >seq1613 Length=19885 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||||| || |||||||||| || ||||| || |||||||||||| | Sbjct 381 CCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTG 322 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| ||| || || ||||| || | |||||||| |||||||| Sbjct 321 AGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGG 262 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||||| ||||| || | | | |||| | |||| ||| Sbjct 261 ATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACC 202 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || |||||||| |||||||||||||| Sbjct 201 TCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| || |||||||||| ||| |||||||| |||||||||||| | Sbjct 153 CCACCTCTCAATCGTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 94 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| ||| || || ||||| || | ||||| || |||||||| Sbjct 93 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGA 34 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | || ||||||||| ||||| ||||| || Sbjct 33 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCAC 2 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| ||| | |||||||||| || || || || || |||||||| | Sbjct 610 GCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACT 551 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || |||| ||| || || ||||| || | || || || || ||||| Sbjct 550 GAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGG 491 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| |||||| ||||| || | | | |||| | |||| || Sbjct 490 AATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGAC 431 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || |||||||||||||| || || ||||| Sbjct 430 TTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || || ||||||||||||||| | || || | || ||||| || || |||||||| Sbjct 801 TCTTTTTGAATGTTGTAGTCGCTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAG 742 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || ||||| | || |||||||| || || ||||| || Sbjct 741 ATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTA 682 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | || ||||| | || |||||||| || || || || || || Sbjct 681 TCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACG 622 Query 45326 AAGATTTGCATG 45337 |||||||||||| Sbjct 621 AAGATTTGCATG 610 >seq114234 Length=910 Score = 132 bits (146), Expect = 4e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| | |||||||||| || ||| || || |||||||||||| | Sbjct 298 CCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 239 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| ||| || |||||||| || | |||||||| |||||||| Sbjct 238 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGA 179 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||| || ||||| || | | | |||| | |||| ||| Sbjct 178 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 119 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| || ||||| |||| ||| || || ||||||||||| Sbjct 118 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| | |||||||||| || ||| || || |||||||||||| | Sbjct 754 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 695 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| ||| || ||||| || |||| |||||||| |||||||| Sbjct 694 AGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGA 635 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||| || ||||| || | | | |||| | |||| ||| Sbjct 634 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 575 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| || ||||| |||| ||| ||||| ||||||||||| Sbjct 574 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 109 bits (120), Expect = 4e-19 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| | |||||||||| || || || || |||||||||||| | Sbjct 526 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTCGCTG 467 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| |||| ||| || || || || || | ||||| || |||||||| Sbjct 466 AGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGGA 407 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||| ||||| || | | |||| | |||| || Sbjct 406 ATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 347 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || |||| ||| || || ||||||||||| Sbjct 346 TCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCAT 300 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||| ||| || || ||||| || | ||||| || |||||||| | ||||||||| Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||||| ||||| || | | |||| | |||| || || | |||||| Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||| |||||| || ||||||||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 756 >seq114236 Length=889 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| | |||||||||| || ||| || || |||||||||||| | Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| ||| || ||||| || || | ||||| || |||||||| Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| ||||| || | | |||| | |||| || Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || ||||| |||| |||||| || ||||||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| | |||||||||| || |||||||| |||||||||||| | Sbjct 592 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 651 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| || || |||||||| || | || ||||| || ||||| Sbjct 652 AGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGA 711 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||| || || || | | | |||| | |||| ||| Sbjct 712 ATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACC 771 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || |||| |||||| |||||||||||||| Sbjct 772 TCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 105 bits (116), Expect = 5e-18 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||| | |||||||||| || |||||||| |||||||||||| | Sbjct 136 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTN 195 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| || || |||||||| || | || ||||| || ||||| Sbjct 196 AGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGA 255 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || || ||| || || || | | | |||| | |||| ||| Sbjct 256 ATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACC 315 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || |||| |||||| || ||||||||||| Sbjct 316 TCCANAGTGATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394496733237919