Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq114234 116 3e-21 seq114236 96.9 3e-15 seq1613 93.3 3e-14 >seq114234 Length=910 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| | || || |||||||| |||||||||||| | || Sbjct 745 AGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGG 686 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| ||||| ||| |||| || | |||||||| || | |||||| Sbjct 685 CCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCT 626 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||| | |||||||| | ||| |||||| | |||| || | || Sbjct 625 TTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTA 566 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| ||||||| ||||| ||||| || || ||||||||| Sbjct 565 ATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 105 bits (116), Expect = 5e-18 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| ||| | || || |||||||| |||||||||||| | || | Sbjct 287 TCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCC 228 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||||||||| ||||| || |||| || | |||||||| || | |||||| || Sbjct 227 GTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTT 168 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| ||| | |||||||| | ||| |||||| | |||| || | || || Sbjct 167 ATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAAT 108 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||||||| ||||| ||||| || || ||||||||| Sbjct 107 GGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 >seq114236 Length=889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| || |||| ||| | || || |||||||| |||||||||||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||| ||||| ||| |||| || | || ||||| || Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || |||| ||||| || | | | |||||| | |||| | Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| || ||||||| ||||| || || || || ||||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| | || ||||| || || |||||||||||| | || Sbjct 601 AGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGG 660 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||| || || || || ||||||| | ||||||||| || | |||||| Sbjct 661 CCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCT 720 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||| | || || | | | | |||||| | |||| || | ||| Sbjct 721 TTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCAAAGTG 780 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| |||||||| || || ||||| |||||||| Sbjct 781 ATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 >seq1613 Length=19885 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| | || ||||||||||| || |||||||| | || Sbjct 600 AGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTGAGGGTACGG 541 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||||||| || || || ||||||| | ||| ||||| || | ||||| Sbjct 540 CCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATCCCTTCT 481 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| |||||||| | | | ||||| | |||| ||||| || Sbjct 480 TTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTA 421 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| |||| ||||||| || || || ||||| |||||| Sbjct 420 ATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | ||||| || |||||||||||||||||||||||| Sbjct 837 CCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTA 778 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| || |||| || | || ||||| || Sbjct 777 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGA 718 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||||| | | | ||||| || ||| Sbjct 717 ATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCGACC 658 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | || || || | |||||||| || |||||||| Sbjct 657 TCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| |||||||||||| | || | ||||||| Sbjct 363 ACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCTTCC 304 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| ||||| || |||| || | |||||||| || | |||||||| || Sbjct 303 AATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCCTTGTCCTGG 244 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||||| | | | |||||| | ||| || | |||||| |||| Sbjct 243 ATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTGATGGTTTTA 184 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | || || ||||| |||||||| Sbjct 183 CCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378788566767555