Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq8437 149 1e-30 >seq8437 Length=12918 Score = 149 bits (164), Expect = 1e-30 Identities = 377/558 (68%), Gaps = 24/558 (4%) Strand=Plus/Minus Query 35147 AAGGACGATAGAACTGGAACAGGAACTCTATCCATT-TTTGGACCCCAAATGAGGTTCTC 35205 ||||| ||| | || || || ||||| |||| | || ||||| |||||||| | ||| Sbjct 6349 AAGGA-GATCGTACAGGCACTGGAAC-CTATTCGTTGTTTGGTGCCCAAATGCGATTCAA 6292 Query 35206 TCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265 | | | || | |||| | ||||| || ||| | || |||||||| || | Sbjct 6291 TATCAGGGAAT---CATTTCCTTTGCTCACGACAAAGCGCGTGTTTTGGAGAGGCGTATT 6235 Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325 ||| ||||| | ||||||||| | ||| | ||| |||| || ||| | | | ||||| Sbjct 6234 GGAGGAACTGTTGTGGTTCATAAAGGGGAGTACTAACGCAAAGGAACTCTCGGATAAGAA 6175 Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTG-GACAGTAGAGGGTTATACG 35384 ||||||| ||| | || || || || |||||| || | ||| ||||| | | Sbjct 6174 AGTACACATTTGGGATGCAAACGGCTCTAAAGAATTTCTGAGTAAGTCT-GGGTTTTCAG 6116 Query 35385 ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTG 35444 || | | |||||| || | || || || || ||||| |||||||| |||||||| |||| Sbjct 6115 ATCGCGAAGAGGGCGACCTTGGTCCGGTTTATGGATTTCAATGGCGCCATTTTGGAGCTG 6056 Query 35445 AATATGAT-ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503 |||| | || || | ||||||| |||||||| ||| |||| || | ||| || | Sbjct 6055 AATACCAAGACATGCA-TGCCGATTACACTGGAAAAGGTGTTGACCAGCTTGCCGATGTT 5997 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATG---ATAGAAGGATGATTATGACG---GCATGG 35557 | || || || | |||||| || |||| ||| |||||| | | |||||| Sbjct 5996 ATCAACAC-----GATACAATCCA-ATCCGAATAGCAGGCGGATTATAATGTGCGCATGG 5943 Query 35558 AATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA-TGACTGCTCAATTTTA 35616 ||| | | |||| | | | ||||| | || || || || | ||| |||||||| Sbjct 5942 AATGCCAAGGATATCCCTCAAATGGCATTACCCCCGTGTCATGCTCTATGC-CAATTTTA 5884 Query 35617 TGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGG 35676 ||| || ||||||| |||| || ||| | ||||| ||| | ||| | || || || Sbjct 5883 TGTTTCTGATGGAGAGCTGTCTTGTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGG 5824 Query 35677 CGTGCCCTTCAATATTGC 35694 | | || |||||||| || Sbjct 5823 CATCCCGTTCAATATCGC 5806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988060752212745