Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq114236 136 4e-27 seq1613 131 2e-25 seq114234 120 3e-22 >seq114236 Length=889 Score = 136 bits (150), Expect = 4e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || ||| ||||| | |||||||||||||| ||||| || ||||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || || ||| |||| ||||| |||||||||||||| Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| || || | | || | ||||| | | ||| || Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || ||||| || ||||| | |||| |||||| Sbjct 154 ACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTNAGGGTGCGGCCGTCTTCC 213 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| ||||| || |||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 214 AACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATC-TTG 272 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||||| | ||| | ||||| | | ||| ||||| | || | || || Sbjct 273 AATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCANAGTGATAGTTTT 332 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || || || || ||||||||| || Sbjct 333 ACCGGTCAAAGTCTTGACNAAGATTTGCATACCT 366 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || ||||| || ||||| | |||| |||||| Sbjct 610 ACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCGTCTTCC 669 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| ||||| || |||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 670 AACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATC-TTG 728 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||||| | ||| | ||||| | | ||| ||||| | || | || || Sbjct 729 AATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCAAAGTGATAGTTTT 788 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || || || || ||||||||| || Sbjct 789 ACCGGTCAAAGTCTTGACAAAGATTTGCATACCT 822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 139632 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT 139691 |||| ||||| |||||||||||||| |||||||| ||||| |||||| || || | | Sbjct 2 AGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACAT 61 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | ||||| | | ||| || || | ||| | || || |||||||| || || | Sbjct 62 TATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTCTTGA 121 Query 139752 CGAATATTTGCAT 139764 |||| |||||||| Sbjct 122 CGAAGATTTGCAT 134 >seq1613 Length=19885 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || |||||||| | ||| | || | |||| ||||| |||||||||||||| || ||| Sbjct 840 TGCCCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG 781 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | || | ||||| ||||| || || || |||| ||||| |||||||| ||| Sbjct 780 CTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGA 721 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| ||||| ||| || || || | | || | ||||| | || || Sbjct 720 GGAATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCG 661 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || | |||||| || || | ||||||||||| |||||||| Sbjct 660 ACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || ||||| || ||||| | || || || ||||| ||||| || ||||| | |||| Sbjct 372 AATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGG 313 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| | || || ||||| |||| ||||| || ||||||||||| || ||||| Sbjct 312 CCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCC 253 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| |||||| || || | | || | ||||| | | ||| ||||| | || Sbjct 252 TTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTG 193 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || ||||| | || || || || ||||||||| Sbjct 192 ATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCATA 154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||||| |||||||| || || || || || | || | || || Sbjct 591 ACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTGAGGGTACGGCCATCCTCC 532 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || |||||||| |||| |||||||||||||| ||||| || |||||||| || Sbjct 531 AATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATCCCTTCTTTATCCTGA 472 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| || || | | || | ||||||| | ||| || |||| || | || || Sbjct 471 ATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTAATGGTTTTT 412 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || || ||||| || ||||| Sbjct 411 CCGGTCAGAGTCTTCACGAAAATCTGCAT 383 >seq114234 Length=910 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||||||||| ||||| || ||||| | |||| ||||| Sbjct 736 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 677 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| |||||||||| || ||||||||||| ||||||||||| || Sbjct 676 AATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 617 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||| | | ||| ||||| | || | || ||| Sbjct 616 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 557 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| |||||||| Sbjct 556 CCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||||||||| ||||| || ||||| | |||| |||||| Sbjct 280 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCTTCC 221 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || || |||| ||||| || ||||||||||| ||||||||||| || Sbjct 220 AATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 161 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||| | | ||| ||||| | || | || ||| Sbjct 160 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 101 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| |||||||| Sbjct 100 CCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 107 bits (118), Expect = 2e-18 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || ||||| || ||||| | || | ||| || Sbjct 508 ACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTCGCTGAGNGTNCGGCCGTCNTCC 449 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || || |||| ||||| |||||||||||||| |||||||||||||| | Sbjct 448 AATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGG 389 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||| || || | | || | ||||| | | ||| || || | ||| | || || Sbjct 388 NTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTA 329 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || ||||| |||||||| Sbjct 328 CCGGTCAAAGTNTTGACGAAGATTTGCAT 300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || || ||||| |||| ||||| |||||||||||||| ||||| || ||||| |||| Sbjct 901 TGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATT 842 Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || || || | | || | ||||| | | ||| || || | ||| | || || ||| Sbjct 841 TTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTACCG 782 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || ||||| |||||||| Sbjct 781 GTCAAAGTCTTGACGAAGATTTGCAT 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495319042088800