Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq114234 114 1e-20 seq114236 93.3 3e-14 seq1613 93.3 3e-14 >seq114234 Length=910 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| | ||||| || | ||| ||| ||||| | ||||| ||| Sbjct 754 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 695 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||||||| ||||||||||| |||| ||||||||||||| || Sbjct 694 AGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGA 635 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| || ||||| | ||| ||||| ||||||||| Sbjct 634 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 575 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || | ||||||||| || ||||||||| Sbjct 574 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 104 bits (114), Expect = 2e-17 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| | ||||| || | ||| ||| ||||| | ||||| ||| Sbjct 298 CCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 239 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||||||| |||||||| || || | ||||||||||||| || Sbjct 238 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGA 179 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| || ||||| | ||| ||||| ||||||||| Sbjct 178 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 119 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || | |||||| || || ||||||||| Sbjct 118 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 >seq114236 Length=889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | ||||| || | ||| ||| ||||| | ||||| ||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||||||| ||||||||||| || | ||||| ||||||| || Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| || || || | | | ||||| ||||||||| Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || || | ||| || || || ||||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 >seq1613 Length=19885 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || | |||||| | ||||| || | ||| || ||||| | |||||| || Sbjct 610 GCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACT 551 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| | || |||||||| || || || || || | || || ||||| | || Sbjct 550 GAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGG 491 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| | || ||||| | | | |||||| |||||||| Sbjct 490 AATCCCTTCTTTATC-CTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGA 432 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || || ||||||||||| ||||| ||||| ||||| |||||| Sbjct 431 CTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | ||| |||||||| | ||||| ||| | || || | || Sbjct 366 AAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCT 307 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| ||||| || || || | ||||||||||||| || | |||||| || || Sbjct 306 TCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCCTTGTCC 247 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| || ||||| | | | ||||| |||||| || || | || || ||| Sbjct 246 TGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTGATGGTT 187 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||| || ||||| |||||||| Sbjct 186 TTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380811200896062