Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq114236 131 2e-25 seq1613 131 2e-25 seq114234 122 9e-23 >seq114236 Length=889 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | || ||| || || | ||||| |||||||| |||||||| ||||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || || ||| |||| ||||| |||||||||||||| Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| || || | | || | ||||| | | || ||| Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Score = 109 bits (120), Expect = 6e-19 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||||| | |||| |||||| | || ||||| Sbjct 166 GTCGATTCCTTCTGGATGTTGTAGTCGCTNAGGGTGCGGCCGTCTTCCAACTGCTTACCG 225 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| |||||||| ||||| ||||| ||||||||||| || ||| || |||| Sbjct 226 GCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTT 285 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | || || || | ||| | || || |||||||| || Sbjct 286 ACATTTTCGATGGTGTCAGAAGCCTCGACCTCCANAGTGATAGTTTTACCGGTCAAAGTC 345 Query 143168 TTTACGAATATTTGCATAGCT 143188 || || || ||||||||| || Sbjct 346 TTGACNAAGATTTGCATACCT 366 Score = 105 bits (116), Expect = 7e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||||| | |||| |||||| | || ||||| Sbjct 622 GTCGATTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCGTCTTCCAACTGCTTACCG 681 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| |||||||| ||||| ||||| ||||||||||| || ||| || |||| Sbjct 682 GCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTT 741 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | || || || | ||| | || || |||||||| || Sbjct 742 ACATTTTCGATGGTGTCAGAAGCCTCGACCTCCAAAGTGATAGTTTTACCGGTCAAAGTC 801 Query 143168 TTTACGAATATTTGCATAGCT 143188 || || || ||||||||| || Sbjct 802 TTGACAAAGATTTGCATACCT 822 >seq1613 Length=19885 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || | ||||| |||||||||||||| |||||||| ||| Sbjct 840 TGCCCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG 781 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || | || | ||||| || || || || || |||| ||||| |||||||| ||| Sbjct 780 CTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGA 721 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| ||||| || || || || | | || | ||||||| || ||| Sbjct 720 GGAATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCG 661 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| || | |||||| || || | ||||||||||| |||||||| Sbjct 660 ACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || ||||| || || | || | || || | ||| |||||| Sbjct 579 GTAGATTCTTTTTGGATATTGTAGTCACTGAGGGTACGGCCATCCTCCAATTGCTTACCA 520 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| |||||||||||||| ||||| || |||||||| || |||||| || || Sbjct 519 GCGAAGATAAGACGTTGCTGATCAGGAGGAATCCCTTCTTTATCCTGAATTTTCTGCTTG 460 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||||| ||| | || || ||||||| || Sbjct 459 ACATTATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTC 400 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 399 TTCACGAAAATCTGCAT 383 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || ||||| || || || | || ||||| ||||| |||||||| ||||| | |||| Sbjct 372 AATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGG 313 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||||| | ||| || ||||| |||| ||||| || ||||||||||| || ||||| Sbjct 312 CCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCC 253 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||||| || || | | || | ||||| | | || || || | ||| Sbjct 252 TTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTG 193 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || ||||| | || || || || ||||||||| Sbjct 192 ATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCATA 154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| || || | || ||||| || || |||||||| ||||| Sbjct 153 CCACCTCTCAATCGTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 94 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | ||| || ||||| |||| ||||| |||||||||||||| Sbjct 93 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGA 34 Query 143078 ATGCCTTCTTTGTC 143091 |||||||| ||||| Sbjct 33 ATGCCTTCCTTGTC 20 >seq114234 Length=910 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| |||||||| |||||||| ||||| | |||| ||||| | ||| || || Sbjct 724 GTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCCAATTGCTTGCCG 665 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||||||| || ||||||||||| ||||||||||| || ||| || || || Sbjct 664 GCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTG 605 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | || ||||| ||||| ||| Sbjct 604 ACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTT 545 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 544 TTCACGAAGATTTGCAT 528 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| |||||||| |||||||| ||||| | |||| |||||| | ||| || || Sbjct 268 GTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCG 209 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| || ||||||||||| ||||||||||| || ||| || || || Sbjct 208 GCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTG 149 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | || ||||| ||||| ||| Sbjct 148 ACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTT 89 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 88 TTGACGAAGATTTGCAT 72 Score = 104 bits (114), Expect = 2e-17 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||||| | || | ||| || | ||| || || Sbjct 496 GTNGANTCNTTNTGGATGTTGTAGTCGCTGAGNGTNCGGCCGTCNTCCAATTGCTTGCCN 437 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||||||||| |||||||||||||| |||| || || Sbjct 436 GCNAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGNTTTTCTGCTTC 377 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | || || |||||||| || Sbjct 376 ACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTN 317 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 316 TTGACGAAGATTTGCAT 300 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || | ||| || ||||| |||| ||||| |||||||||||||| ||||| || ||| Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| || || | | || | ||||| | | || ||||| | || | Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| || || ||||| |||||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506252997462480