Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8437 93.3 6e-14 seq116056 86.0 9e-12 >seq8437 Length=12918 Score = 93.3 bits (102), Expect = 6e-14 Identities = 300/456 (66%), Gaps = 10/456 (2%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||||||||| || || || || || ||||| || ||| | || | || | | || Sbjct 6109 AAGAGGGCGACCTTGGTCCGGTTTATGGATTTCAATGGCGCCATTTTGGAGCTGAATACC 6050 Query 70122 TAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGA 70179 |||| ||| | | || || | || | |||||||| || |||| || | || | Sbjct 6049 AAGACATGCATGCC-GATTACACTGGAAAAGGTGTTGACCAGCTTGCCGATGTT-ATCAA 5992 Query 70180 CACTCTCAAGACCAATCC-AACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238 ||| | | ||||||| || || ||| |||| |||||||| |||||||| | | Sbjct 5991 CACGATACAATCCAATCCGAATAGC-AGGCGGATTATAATGTGCGCATGGAATGCCAAGG 5933 Query 70239 ATTTGCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTACTCGTACGA 70296 || | | ||||||||| |||| |||||||| || | || | | ||||| | || Sbjct 5932 ATATCCCTCAAATGGCATTACCCCCGTGTCATGCTCTATGCC--AATTTTATGTTTCTGA 5875 Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 ||| | |||| || | ||||| | ||| ||||||||| | || | || || Sbjct 5874 TGGAGAGCTGTCTTGTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGGCATCCCGTT 5815 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 || || || |||||||| | | ||| | ||||||||||| |||| ||||| | Sbjct 5814 CAATATCGCCAGCTATTCCTTACTCACGTATATGATTGCTCATGTTACGAATTTGAAACC 5755 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 || |||||||| || ||||| || ||||| || || |||||| | || || | Sbjct 5754 CGGTGACTTCGTACATACTATTGGTGATGCTCATGTTTACACGAATCACGTTGAAGCAAT 5695 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCC 70512 | | ||||| | || ||||| ||||| || || Sbjct 5694 CGAAGAACAACTGAAGCGTGAGCCAAGACCGTTCCC 5659 >seq116056 Length=8111 Score = 86.0 bits (94), Expect = 9e-12 Identities = 938/1501 (62%), Gaps = 82/1501 (5%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| ||| ||| || || |||| ||||| | | || ||| | |||| Sbjct 1508 ACCAACGGAAACTCCAACGGTCTCTTGCCCATGCTGCGTGTTTATAATAACACAGCACGT 1567 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || ||||| |||||| ||||||| || | || || ||| | || || ||| Sbjct 1568 TACGTAGACCAAGGCGGTAATAAAAGGCCAGGTGCATTCGCGGTGTACCTCGAGCCGTGG 1627 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAA--ACTCTGGCTTTGAAGAGGCAC 96984 || ||||| || ||||||||| | ||| ||| |||| || | ||| || || || Sbjct 1628 CATGCGGATGTCTTTGACTTTTT--AGACGCGAAAAAGAACACGGGCAAAGATGAATCAA 1685 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || ||||| | || || || | ||| | || |||||||| ||||| || || | Sbjct 1686 GGGCACGGGACCTTTTCTACGCGATGTGGATACCGGATTTGTTTATGAAACGGGTTGAAA 1745 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCC---GACTCGTCACCCGGTCTGTCCGATTGCT 97101 | ||| | ||| ||| | |||||| || || | ||| || ||| | Sbjct 1746 GCAATGGGGATTGGTCGCTATTTTGCCCCAATGAAGCGATA---GGTTTGGTCGACGTAT 1802 Query 97102 GGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG- 97157 || || |||||||| ||| ||| | || || ||| || || || | Sbjct 1803 ATGGTGATGAGTTTGAT---AAGCTCTACGAGAAGTATGAAAAAGCAGGGAGAG-CGAGG 1858 Query 97158 -AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 |||| | || | || | | |||| ||| | |||||| | | | ||| | || || || Sbjct 1859 AAGACAA-TCAAAGCGCAAAAACTATGGTACGCCATCATCGAGTCGCAGATCGAAACCGG 1917 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAAC-CAACGCCACTTGG 97275 || |||||||| |||||||| || | || | | || | ||| ||| | ||| Sbjct 1918 TACGCCGTACATGCTCTACAAAGACGCT-TGCAACAAAAAATCAAATCAAAAAGATCTGG 1976 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGA 97335 |||| ||||| |||| ||||| ||||| || |||||||| ||| || ||||||| Sbjct 1977 GCACGATCAAAAGCTCAAATCTCTGCACTGAGATTGTAGAATACACCAGCAAGGACGAGG 2036 Query 97336 CGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTA------GAGGGTAAAG 97389 ||| || || ||| || ||| || ||||| | ||| || || || Sbjct 2037 TGGCCGTGTGTAATCTCGCTTCGATCGCATTGCCCCGATACGTAACCAACGATGGAAA-- 2094 Query 97390 TGTTTAATCTCAACCTATTGGCAAAGACG-GTGC---GTCTGGTGACTAGGAATCTAAAC 97445 || | || |||| |||| | |||| |||| ||| || || ||||||| ||| Sbjct 2095 -GTATGATTTCAAAAAATTGT--ACGACGTGTGCAAGGTC--GTCACACGGAATCTGAAC 2149 Query 97446 AAGATTATCGACAATGCACT-CTATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCA 97504 || || || |||| | ||| ||| ||| | || || || || ||| | | ||| Sbjct 2150 AAAATCATTGACA-TCAACTACTACCCCGTGCCTCAAGCGAGGAATTCGAACATGAGGCA 2208 Query 97505 CCGACCCATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGC 97564 ||| || |||||||| ||||||||||| || ||||| | |||| || | || | Sbjct 2209 CCGTCCGATCGGTATTGGAGTGCAAGGACTGGCGGACGCCTTTATCATGTTGCGAATGCC 2268 Query 97565 CTACGAG------GACTCGATGCAGTTGAATCGTGACATTTTCGAAACCATCTACCATGC 97618 | ||| || | ||| || | || ||| || ||||| ||||| || || Sbjct 2269 ATTCGACAGCCCCGAGGCCATGAAGCTCAACGTTGAAATATTCGAGACCATTTATTTCGC 2328 Query 97619 AGCACTGACGGAGAGTTGCCAACTGGCCAGAGTGCACGGAGTCTACGAATCGTACCACGG 97678 || |||| | | |||| |||| || || | ||| || || || | || Sbjct 2329 GGCTTTGACAGCGTCTTGCGAACTTGCGGAAGAGAGCGGTCCGTATGAGAGCTATGAGGG 2388 Query 97679 TAGCCCGACCAGTCGTGGAGAGTTGCACTTCGACCGATACTCGGTG---CACAGCCAAAA 97735 || | ||| | || | || || | || | ||| | || | Sbjct 2389 ATCTCCTATCAGCCAAGGTCAATTACAGTATGATTTGTGGGGCGTGACCCCCACTGATTT 2448 Query 97736 GTGTGACTGGTCATCGTTGCGCAAAGACATTGCTCG----GTACGGTTTGAGAAACTCTT 97791 ||| || ||| | || ||| ||||| | | || | |||| | | || ||| Sbjct 2449 GTGGGATTGGGCGTCTTTG---AAAGAGAA-GATCAAAAAGCACGGAGTACGCAATTCTC 2504 Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 ||||| | || |||||||| || || ||||| | ||| | | || ||| |||| | Sbjct 2505 TGCTGTTAGCGCCGATGCCAACAGCATCCACTGCTCAAATACTGGGTAATAATGAAGCCA 2564 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCA-ATTG 97910 |||| || | ||| ||||| ||| | |||| | ||| || || || || |||| Sbjct 2565 TTGAGCCATACACTAGCAACATTTACACGCGACGTGTGCTGTCCGGCGAATTCCAGATTG 2624 Query 97911 ---ACCAACGTGCACT--TGG-TTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGAC 97964 | || ||| ||| ||| || || | | || | | ||||| ||||||||| Sbjct 2625 TAAATCAGCGTTTACTCATGGATTTGACA---GAAAGAGGT--ATCTG--GAACGATGAT 2677 Query 97965 ATGGCCCAGTTGA---TCATGTACAACAATGGGTCCATTCAAAACATTACCATCA--TCC 98019 | ||||| |||| ||||| || || ||||||||||| || ||| | | Sbjct 2678 GTAA---AGTTGCAGCTCATCGCTAACAACGGTTCGATTCAAAACAT--CCCTCAGATTC 2732 Query 98020 CGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCG 98079 | || || || | | | || || || ||||||||| || |||| | ||| Sbjct 2733 CTGAGGATATGAAGAAATTGTATCGTACCGTGTGGGAGATTTCGCAGAAGAACATCATCA 2792 Query 98080 ATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTG 98139 | |||||||||||| | | ||||| ||||| |||||| || || | || | | Sbjct 2793 AAATGGCTGCCGACCGGGCACCGTACATCGACCAAAGTCAAAGTTTGAACATTCACATCG 2852 Query 98140 CCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCA 98199 ||||||| | |||| | |||| || || ||||||| ||||| || |||| Sbjct 2853 CCGAGCCTAACTACGGCAAGTTGACCAGCATGCATTTTTACGGGTGGAAGGTCGGACTCA 2912 Query 98200 AGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGG 98259 ||||||| ||||| ||||| |||| ||| |||| | | ||||| | || || |||| Sbjct 2913 AGACGGGGATGTATTATCTTCGAACGAAGCCGGCGGCTCAAGCCATCCAGTTCACAGTGG 2972 Query 98260 A 98260 | Sbjct 2973 A 2973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739946323609640