Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq114234 141 7e-29 seq114236 122 6e-23 seq1613 118 8e-22 >seq114234 Length=910 Score = 141 bits (156), Expect = 7e-29 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | || || || | || || |||||||| |||||||| ||||| Sbjct 298 CCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 239 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| ||||| ||||| ||| | || | ||| ||||| ||| ||| Sbjct 238 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGA 179 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||| || ||| ||| | || ||||| || | || || Sbjct 178 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 119 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| ||||||| |||||| || || |||||||| Sbjct 118 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | || || || | || || |||||||| |||||||| ||||| Sbjct 754 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 695 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| ||||| ||||| || | |||| ||| ||||| ||| ||| Sbjct 694 AGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGA 635 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||| || ||| ||| | || ||||| || | || || Sbjct 634 ATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACC 575 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| ||||||| |||||| || || |||||||| Sbjct 574 TCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 109 bits (120), Expect = 4e-19 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | || || || | || || || || || |||||||| ||||| Sbjct 526 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTCGCTG 467 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || ||||| ||||| || | || | ||| || || ||| ||| Sbjct 466 AGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGGA 407 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||| ||| ||| | || || || || | || || Sbjct 406 ATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 347 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| |||||||| |||| ||| || || || |||||||| Sbjct 346 TCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCAT 300 >seq114236 Length=889 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| | ||| || || | || || |||||||| |||||||| ||||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| ||||| ||||| || | || | ||| || || ||| ||| Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| ||| | || || || || | || || Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| ||||| ||||||| ||| || || || |||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 >seq1613 Length=19885 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||||| || || || || | || || || ||||| |||||||| ||||| Sbjct 381 CCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTG 322 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| ||||| ||||||||| | || | ||| ||||| ||| || Sbjct 321 AGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGG 262 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| ||| | || ||||| || | || || Sbjct 261 ATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACC 202 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||||||||| || ||||| || ||||| ||||||||| Sbjct 201 TCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCATA 154 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| ||| | || || || | || || |||||||| || ||||| || | Sbjct 611 TGCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCAC 552 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | || || ||||| || |||||| | || | |||||| || || | Sbjct 551 TGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAG 492 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || |||||| ||| ||| | || ||||| ||| | || | Sbjct 491 GAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGA 432 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||||| || |||||||| || || ||||| ||||| Sbjct 431 CTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| || ||| || || | ||||| || || || |||||||| ||||| Sbjct 153 CCACCTCTCAATCGTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGCTG 94 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || ||||| ||||||||| | || | ||| || || ||| ||| Sbjct 93 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGA 34 Query 15257 ATTCCTTCTTTGTC 15270 || ||||| ||||| Sbjct 33 ATGCCTTCCTTGTC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361648899365799