Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1613 95.1 8e-15 seq114234 93.3 3e-14 seq114236 84.2 1e-11 >seq1613 Length=19885 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || ||||| ||||| || || |||||||| |||||||| ||| Sbjct 609 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTG 550 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || ||||||||||| ||| || || | ||||||||| || | || Sbjct 549 AGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 490 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| ||| || || | | || |||||| | | || Sbjct 489 ATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACT 430 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || ||||| || |||||||| ||||| Sbjct 429 TCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 383 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || || || || ||||| ||||| ||||| ||||| || ||||| || || Sbjct 391 AATCTGCATTCCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTT 332 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||| || | || | || ||||||||||| ||| || || | ||| || || Sbjct 331 GTAGTCGCTGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTG 272 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 || | || || ||||| || || || ||| || || | | || ||||| Sbjct 271 ATCGGGAGGGATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGA 212 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| |||||||| || ||||| || |||||||| || || || |||||||| Sbjct 211 AGCCTCAACCTCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 >seq114234 Length=910 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || ||||||||||| || ||||| || | | || | ||| ||| Sbjct 280 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCTTCC 221 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || || || | ||| || || || | || ||||||||||| || | Sbjct 220 AATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 161 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || || | | ||| ||||| | | || |||| ||| || ||||| Sbjct 160 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 101 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||| ||||| |||||||| Sbjct 100 CCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || ||||||||||| || ||||| || | | || | || ||| Sbjct 736 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 677 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || ||| || | ||| || || || | || ||||||||||| || | Sbjct 676 AATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 617 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || || | | ||| ||||| | | || |||| ||| || ||||| Sbjct 616 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 557 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | |||||| ||||| |||||||| Sbjct 556 CCTGTCAAAGTTTTCACGAAGATTTGCAT 528 >seq114236 Length=889 Score = 84.2 bits (92), Expect = 1e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | || ||||| ||||| || ||||||||||| || ||||| || Sbjct 363 ACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCT 422 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | ||| ||||||||||| || ||| || | ||| ||||| || | || Sbjct 423 NAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGG 482 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || || ||| || || | | || ||||| | | || Sbjct 483 AATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGAC 542 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || || | ||| || ||||| |||||||| Sbjct 543 TTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318310847730822