Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq114234 111 1e-19 seq114236 109 4e-19 seq1613 104 2e-17 >seq114234 Length=910 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| ||| | ||||| || | || ||||||||| || || || ||| | Sbjct 754 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 695 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || |||| |||||||| || || ||||| |||| || || || || |||| Sbjct 694 AGAGTGCGGC-CATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGG 636 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || || ||||| || ||| || || | | ||| || Sbjct 635 AATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGAC 576 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || ||||| ||||| || |||||||| Sbjct 575 CTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| ||| | ||||| || | || ||||||||| || || || ||| | Sbjct 298 CCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 239 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||||||| || || || || || | || || || || |||| Sbjct 238 AGAGTGCGGC-CGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGG 180 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || || ||||| || ||| || || | | ||| || Sbjct 179 AATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGAC 120 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || ||||| || || || |||||||| Sbjct 119 CTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| ||| | ||||| || | || || || || || || || ||| | Sbjct 526 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTCGCTG 467 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || | || |||||||| || || || || || | || ||||| || |||| Sbjct 466 AGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGGA 407 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| || |||| || || || || | | ||| |||| | ||| || Sbjct 406 ATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 347 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| ||||||||||| ||||| || || || |||||||| Sbjct 346 TCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCAT 300 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || |||||||| || || || || || | || ||||| || |||| | || || || Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||||| || || || || | | ||| |||| | ||| || |||| ||||| Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| |||||||| || || |||||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 756 >seq114236 Length=889 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| | ||||| || | || ||||||||| || || || ||| | Sbjct 363 ACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCT 422 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || | || |||||||| || || ||||| || | || ||||| || ||| Sbjct 423 NAGAGTG-CGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAG 481 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || || ||||| || || || || | | ||| |||| | ||| | Sbjct 482 GAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGA 541 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||| ||||| ||||| || || |||||||| || || |||||||| Sbjct 542 CTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 >seq1613 Length=19885 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| ||| | ||||| || | || |||||||| ||||| || || | Sbjct 609 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTG 550 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| |||||||| || || || || || | |||||||| || |||| Sbjct 549 AGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 490 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| || ||||| || | | || || | | ||| || Sbjct 489 ATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACT 430 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| ||||| | ||||||||| || || ||||| Sbjct 429 TCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354258136744572