Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq114236 136 9e-27 seq1613 132 1e-25 seq114234 127 5e-24 seq80631 120 7e-22 seq74517 120 7e-22 seq10201 87.8 4e-12 >seq114236 Length=889 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || || || | || || || ||||| ||||| || || ||||| Sbjct 589 ATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCG 648 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||| || | |||||||| | || || || || || || || | |||||||| ||| Sbjct 649 CTTAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGA 708 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| |||||||| | |||||||||||| | ||| || || || Sbjct 709 GGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCG 768 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || ||||| ||||| || | || || ||||| || ||||| Sbjct 769 ACCTCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 129 bits (142), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || || || | || || || ||||| ||||| || || ||||| Sbjct 133 ATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCG 192 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | |||||||| | || || || || || || || | |||||||| ||| Sbjct 193 CTNAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGA 252 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| |||||||| | |||||||||||| | ||| || || || Sbjct 253 GGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCG 312 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || ||||| ||||| || | || || || || || ||||| Sbjct 313 ACCTCCANAGTGATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 >seq1613 Length=19885 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | || || ||||||||||| || ||||| |||||| Sbjct 612 ATGCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCA 553 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | || || || | ||| || ||||| || || || | || ||||||||| Sbjct 552 CTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGA 493 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||||||||||||||| || ||| || ||||| || | ||| ||| || || Sbjct 492 GGAATCCCTTCTTTATCCTGAATTTTCTGC-TTGACATTATCGATGGTGTCGGAAGCCTC 434 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || || || || || || || || || ||||||||| Sbjct 433 GACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 125 bits (138), Expect = 2e-23 Identities = 182/250 (73%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 104314 TTTCCATACTTTATTTATTCCCC--CTCTTAGCCTAAGTACTAGATGTAATGTAGATTCT 104371 |||| |||| | ||||| ||| ||| || | |||||| ||||| | ||||||||| Sbjct 855 TTTCGATAC---ACTTATTGCCCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCT 799 Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || ||||| || ||||| || || | || ||||| || || || || || || ||| Sbjct 798 TTTTGAATGTTGTAGTCGCTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATT 739 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTC 104490 || | ||| ||||| ||||| || ||||| || || || ||||| ||| || || || || Sbjct 738 AGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTCTGC-TTGACGTTATC 680 Query 104491 TACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | ||| || | ||| ||| ||||| || || || ||||| || || || |||||||| | Sbjct 679 GATGGTGTC-CGAGGCTTCGACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGA 621 Query 104550 ATATCTGCAT 104559 | || ||||| Sbjct 620 AGATTTGCAT 611 >seq114234 Length=910 Score = 127 bits (140), Expect = 5e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || || || | || || ||||| ||||| || || || ||||| Sbjct 757 ATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCG 698 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | || ||||| | ||| || || ||||| || || | ||||||||| ||| Sbjct 697 CTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGA 638 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||||||||| |||||||| ||| || ||||| || | ||| || || || Sbjct 637 GGAATGCCTTCTTTATCTTGAATCTTCTGC-TTGACATTATCAATGGTGTCAGAAGCCTC 579 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | ||||| || || || || | ||||| || || || |||||| Sbjct 578 GACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 125 bits (138), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || || || | || || ||||| ||||| || || || ||||| Sbjct 301 ATTCCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCG 242 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | |||||||| | ||| || || || || || || | ||||||||| ||| Sbjct 241 CTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGA 182 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||||||||| |||||||| ||| || ||||| || | ||| || || || Sbjct 181 GGAATGCCTTCTTTATCTTGAATCTTCTGC-TTGACATTATCAATGGTGTCAGAAGCCTC 123 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | ||||| || || || || | ||||| || || || |||||| Sbjct 122 GACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 >seq80631 Length=8887 Score = 120 bits (132), Expect = 7e-22 Identities = 221/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 238564 TCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTA-AGA 238622 ||||| || | |||| ||||| | || ||||| |||||||| | || ||||| | | Sbjct 3797 TCGAGCAAGGCAAAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGGTGCACA 3738 Query 238623 CTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT 238682 | |||||||||||| ||||| | | ||||| ||||| || || ||||| || ||| || Sbjct 3737 CC-GGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCT 3679 Query 238683 AGATCTCCAAAGGAAGCTCT-TAGATATAGTATTTATCTGAACGATAAATACGAACTCGA 238741 ||| || | | ||||| |||| | || | ||||||||||| || ||||| || Sbjct 3678 GAATCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGA 3620 Query 238742 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-- 238799 ||| ||||| ||||| || || || || |||||||| || ||||| | || ||| Sbjct 3619 CGGCCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCA 3560 Query 238800 AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACT 238859 |||| ||| |||||| | || || || || | | ||||||||| | || | Sbjct 3559 AGGG--TGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGT 3502 Query 238860 AAGAAAAAATTTGATGT 238876 | | ||||||||| || Sbjct 3501 CAAAGAAAATTTGACGT 3485 >seq74517 Length=5657 Score = 120 bits (132), Expect = 7e-22 Identities = 221/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 238564 TCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTA-AGA 238622 ||||| || | |||| ||||| | || ||||| |||||||| | || ||||| | | Sbjct 4474 TCGAGCAAGGCAAAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGGTGCACA 4415 Query 238623 CTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT 238682 | |||||||||||| ||||| | | ||||| ||||| || || ||||| || ||| || Sbjct 4414 CC-GGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCT 4356 Query 238683 AGATCTCCAAAGGAAGCTCT-TAGATATAGTATTTATCTGAACGATAAATACGAACTCGA 238741 ||| || | | ||||| |||| | || | ||||||||||| || ||||| || Sbjct 4355 GAATCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGA 4297 Query 238742 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT-- 238799 ||| ||||| ||||| || || || || |||||||| || ||||| | || ||| Sbjct 4296 CGGCCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCA 4237 Query 238800 AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACT 238859 |||| ||| |||||| | || || || || | | ||||||||| | || | Sbjct 4236 AGGG--TGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGT 4179 Query 238860 AAGAAAAAATTTGATGT 238876 | | ||||||||| || Sbjct 4178 CAAAGAAAATTTGACGT 4162 >seq10201 Length=17431 Score = 87.8 bits (96), Expect = 4e-12 Identities = 229/342 (67%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 165104 GATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA-AGAAG 165162 ||| |||||| | ||||| || || |||||||||| | || || |||| ||||| Sbjct 10818 GATCAATGGACAGCGTGGAAAAAGATGGGCGATCCTGTTCTGCACATTCAGCTCGAGAAG 10877 Query 165163 ATGGGCAGATATGATGTTGATAGCACC-CTTAACAGCAAACAGTTTAGCGAAGATAGCTA 165221 ||||| ||||||||| | ||||||| ||| || ||||| | | || || | || | Sbjct 10878 -TGGGCGGATATGATGGTATTAGCACCACTTGAC-GCAAATACACTCGCAAAAGTGGCGA 10935 Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATT------AATA 165275 | || || ||| | || | | || || | |||||||||| || || || | Sbjct 10936 ATGGCATATGTGACAATCTAGTGACTGAAATTGCTAGAGCGTGGGATTTTGCCAGCAAGA 10995 Query 165276 AACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAGC 165335 |||| | | || ||||| ||||||||||| |||| || ||||| || || | Sbjct 10996 AACCAGTCATATTTTGTCCTGCTATGAATACTAAGATGTATGATCATCCAATCACCTCTC 11055 Query 165336 AGCATATAGAAACTCTTAAGCATATGGGG-TACATAGAAGTTGAGTGTATTGAGAAAAAG 165394 || || ||| |||||| ||||| | ||| |||||| | |||| ||| Sbjct 11056 CTCAGATTCAAA-TCTTAAAGTCCTGGGGATTCATTCAAGTTGCGCCCATTGCCAAACCT 11114 Query 165395 CTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGTT 165436 || || ||||||||| |||| | |||| ||||| |||||| Sbjct 11115 CTTGCCTGTGGTGATGTTGGCATGGGTGGAATGGCTGAAGTT 11156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149626074391412