Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1613 96.9 3e-15 >seq1613 Length=19885 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| |||||||| || || | || || | || |||| ||||| || || | Sbjct 345 TCCTTTTGGATGTTGTAGTC-GCTGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAA 287 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||| ||||| || | || |||||||||| ||||||||||||| | Sbjct 286 GATGAGACGCTGTTGATCGGGAGGGATACCTTCCTTGTCCTGGATTTTCTGCTTGACATT 227 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || ||| ||| | || |||||||||||||| ||||| || || Sbjct 226 ATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGAC 167 Query 48715 AAAAATCTGCAT 48726 ||| || ||||| Sbjct 166 AAAGATTTGCAT 155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 || ||||| || ||||| ||| | | || || | ||||||| |||||||| || | Sbjct 573 TCTTTTTGGATATTGTAGTCA-CTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAA 515 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||| |||||||| || | | ||| || ||| |||||||||||||| | Sbjct 514 GATAAGACGTTGCTGATCAGGAGGAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATT 455 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| || ||| || | || |||||||| ||||| ||||| ||||| Sbjct 454 ATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCAC 395 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 394 GAAAATCTGCAT 383 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || || |||||||||||||| || || || || || | || ||||||| Sbjct 814 ATGAAGAGTAGATTCTTTTTGAATGTTGTAGTC-GCTAAGCGTACGGCCATCTTCCAGCT 756 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | |||| |||||||||||| || | | ||||||||| || | Sbjct 755 GCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCT 696 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG-TCTCGACTGTTATGGTTTTACCG 48700 ||||||||| | ||||| || | || || || ||| | || || || || || Sbjct 695 TCTGCTTGACGTTATCGATGGTGTCCG-AGGCTTCGACCTCAAGCGTGATCGTCTTTCCT 637 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| || || || ||||| Sbjct 636 GTGAGGGTTTTTACGAAGATTTGCAT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420634406494139