Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1613 143 2e-29 seq114234 131 2e-25 seq114236 127 2e-24 >seq1613 Length=19885 Score = 143 bits (158), Expect = 2e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| || ||||||||||| |||||||||||||| ||||||||||| | | Sbjct 393 AAAATCTGCATTCCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATG 334 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||||| | ||| | ||| |||| || || || | ||||| | | || Sbjct 333 TTGTAGTCGCTGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGT 274 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| ||||| |||||||| ||||| | ||||| |||||| ||| |||||| Sbjct 273 TGATCGGGAGGGATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCA 214 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||||||||| || |||||||| || |||||||| ||||| Sbjct 213 GAAGCCTCAACCTCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Score = 138 bits (152), Expect = 1e-27 Identities = 181/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 94760 GGTTTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATT 94817 || |||||| || ||| || || ||||||| || || ||||||||||||||||||| Sbjct 632 GGGTTTTTACGAAGATTTGCATGCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATT 573 Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 | ||||| | || || || || | || | |||||||| || || || | |||| Sbjct 572 CTTTTTGGATATTGTAGTCACTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGA 513 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | ||||||||| |||||||| |||||||| || | |||||| |||||| Sbjct 512 TAAGACGTTGCTGATCAGGAGGAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTAT 453 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| ||||| | ||||| |||| || ||||||||||| || ||||| ||||| | Sbjct 452 CGATGGTGTCGGAAGCCTCGACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGA 393 Query 94998 AGATCTGCAT 95007 | |||||||| Sbjct 392 AAATCTGCAT 383 Score = 127 bits (140), Expect = 2e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||||||||| ||||| | ||| || ||||| | || | ||| |||| Sbjct 818 CAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTAAGCGTACGGCCATCTTCCA 759 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| | ||||||| | ||||||||||||||||| ||||| ||||| | | Sbjct 758 GCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGA 699 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||| ||| ||||| | | ||||| |||| |||||| || |||| Sbjct 698 TCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGATCGTCTTTC 639 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| || ||||| ||||||| Sbjct 638 CTGTGAGGGTTTTTACGAAGATTTGCATGC 609 Score = 102 bits (112), Expect = 7e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||||||| | |||||||||||||| |||||||| || | ||| | Sbjct 161 TTTGCATACCACCTCTCAATCGTAGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGT 102 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | ||| | |||||||| || || || | ||||| | | ||||||| Sbjct 101 AGTCGCTGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGAT 42 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 | |||||||| ||||| ||||| | ||||| Sbjct 41 CGGGAGGAATGCCTTCCTTGTCCTGGATTTT 11 >seq114234 Length=910 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || | ||||||||||||||||| || ||||| | ||| | Sbjct 762 TTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGT 703 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | |||| | ||| |||| || || ||| ||||||| | | || |||| Sbjct 702 AGTCGCTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGAT 643 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| |||||||| || | ||| || |||||| | | ||||||| Sbjct 642 CGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAG 583 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || |||||||| || || | ||||||||| ||||| ||||| Sbjct 582 CCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 120 bits (132), Expect = 3e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || | ||||||||||||||||| || ||||| | ||| | Sbjct 306 TTTGCATTCCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGT 247 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | |||| | || |||| || || ||| | ||||| | | || |||| Sbjct 246 AGTCGCTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGAT 187 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| |||||||| || | ||| || |||||| | | ||||||| Sbjct 186 CGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAG 127 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || |||||||| || || | |||||| || ||||| ||||| Sbjct 126 CCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCAT 72 Score = 105 bits (116), Expect = 6e-18 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || || |||||||||||||| || || || || | ||| | Sbjct 534 TTTGCATTCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGT 475 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | || | || |||| || || || | ||||| | | ||||||| Sbjct 474 AGTCGCTGAGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGAT 415 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||||||||| | |||| ||| || ||| |||||| | Sbjct 414 CGGGAGGAATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAG 355 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || || ||||| || || | ||| || || ||||| ||||| Sbjct 354 CCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCAT 300 >seq114236 Length=889 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||||| || ||||||||||||||||| || ||||| | ||| | Sbjct 356 TTTGCATACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGT 415 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | |||| | || |||| || || ||| ||||||| | | ||||||| Sbjct 416 AGTCGCTNAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGAT 475 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||| ||||| | ||||| ||| || ||| |||||| | Sbjct 476 CGGGAGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAG 535 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || || ||||| || || | ||| || || ||||| ||||| Sbjct 536 CCTCGACTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || | |||||||||||||| |||||||| || | ||| | Sbjct 584 TTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGT 643 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | ||| | || |||| ||| || ||| | ||||| | | ||| |||| Sbjct 644 AGTCGCTTAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGAT 703 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| |||||||| || | ||| || | || || ||| ||||||| Sbjct 704 CTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAG 763 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| ||||| || || | ||| || |||||||| ||||| Sbjct 764 CCTCGACCTCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 125 bits (138), Expect = 6e-24 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || | |||||||||||||| |||||||| || | ||| | Sbjct 128 TTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGT 187 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | ||| | || |||| ||| || ||| | ||||| | | ||| |||| Sbjct 188 AGTCGCTNAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGAT 247 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| |||||||| || | ||| || | || || ||| ||||||| Sbjct 248 CTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAG 307 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| ||||| || || | ||| || || ||||| ||||| Sbjct 308 CCTCGACCTCCANAGTGATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447617984294040