Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq114236 105 6e-18 seq1613 100 2e-16 seq114234 95.1 1e-14 >seq114236 Length=889 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || | || || ||||| |||||| ||||| ||| | Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | || || || ||||| || || |||||| | || ||||| Sbjct 531 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 472 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| ||||| ||||| ||||| | | || | ||| || || Sbjct 471 GCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTACAA 412 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||||||||||||| | || |||| |||||||| ||||||| Sbjct 411 CATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGG 364 >seq1613 Length=19885 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||| || || || || || |||||||||||||| | ||| ||| | Sbjct 382 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAAACCATTACTCTTGAAGTCGAGGCTTC 441 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | || || || |||||| ||||||||||| | || |||||| Sbjct 442 CGACACCATCGATAATGTCAAGCAGAAAATTCAGGATAAAGAAGGGATTCCTCCTGATCA 501 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | ||||| | || || || ||||| || |||| | ||| | || || || Sbjct 502 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGCCGTACCCTCAGTGACTACAA 561 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| |||||| | || |||| ||||| || |||| || Sbjct 562 TATCCAAAAAGAATCTACTTTGCACTTGGTCCTGAGACTGAGAGGTGG 609 >seq114234 Length=910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || || ||||| | || || ||||||||||| | || ||| | Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || || || ||| |||||||||||| | || ||||| Sbjct 587 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 646 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || | || || | ||| ||||| ||||| ||||||| | || | ||| || || Sbjct 647 ACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTACAA 706 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||||||||||||| | || |||| | ||| || |||| |||| Sbjct 707 CATCCAAAAAGAGTCTACTTTGCACTTGGTCCTCAGACTGAGAGGTGGAA 756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || |||||||| | || || ||||||||||| | || ||| | Sbjct 71 AATGCAAATCTTCGTCAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 130 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || || || ||| |||||||||||| | || ||||| Sbjct 131 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 190 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || | || || | || ||||| ||||| ||||| | | || | ||| || || Sbjct 191 ACAGCGTCTCATCTTCGCCGGCAAGCAATTGGAAGACGGCCGCACTCTCAGCGACTACAA 250 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||||||||||||| | || |||| | ||| || |||| |||| Sbjct 251 CATCCAAAAAGAGTCTACTTTGCACTTGGTNCTNAGANTGAGAGGTGGAA 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424721213840680