Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq114236 131 1e-25 seq104286 127 1e-24 seq110744 122 6e-23 seq80334 122 6e-23 seq50081 122 6e-23 seq114234 118 7e-22 seq108633 111 1e-19 seq103668 109 4e-19 seq12284 93.3 3e-14 >seq114236 Length=889 Score = 131 bits (144), Expect = 1e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | || ||||| || | ||| ||| ||||| || ||||| || Sbjct 362 TACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGC 421 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || ||||| || |||||||| || || || || ||||||| | Sbjct 422 TNAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAG 481 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| ||||| ||||||||||| | || ||| ||| | || | Sbjct 482 GAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGA 541 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||||||||| || ||||| || || ||||| || ||||| Sbjct 542 CTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 590 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38184 AATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACA 38243 || || || || || ||||||| || | |||||| |||||| ||||| ||||||||| Sbjct 1 AAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACA 60 Query 38244 TTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 || | || ||| ||| | || ||||| | |||||||||||||| ||||| || || Sbjct 61 TTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTCTTG 120 Query 38304 ACGAATATCTGCAT 38317 ||||| || ||||| Sbjct 121 ACGAAGATTTGCAT 134 >seq104286 Length=2468 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| |||||| ||| |||| || |||||||| Sbjct 280 AAGCCCGTTCCCTTGGCTGTGGTTTCGCCAGATAGCAGACAGGGACAGAGGGAATCTCGT 221 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 220 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 186 >seq110744 Length=6167 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||| |||||| ||| |||| || |||||||| Sbjct 2794 AAGCCCGTTCCCTTGGCCGTGGTTTCGCCAGATAGCAGACAGGGACAGAGGGAATCTCGT 2853 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2854 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2888 >seq80334 Length=10517 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||| |||||| ||| |||| || |||||||| Sbjct 4421 AAGCCCGTTCCCTTGGCCGTGGTTTCGCCAGATAGCAGACAGGGACAGAGGGAATCTCGT 4362 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4361 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4327 >seq50081 Length=12361 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||| |||||| ||| |||| || |||||||| Sbjct 3150 AAGCCCGTTCCCTTGGCGGTGGTTTCGCCAGATAGCAGACAGGGACAGAGGGAATCTCGT 3091 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3090 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3056 >seq114234 Length=910 Score = 118 bits (130), Expect = 7e-22 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | || ||||| || | ||| || || || || ||||| | Sbjct 530 CATT-CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGT 472 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || |||| || ||||| || || || || || || || || ||||||| Sbjct 471 CGCTGAGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGG 412 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| |||| ||||||||||| | || ||| ||| | | Sbjct 411 GAGGAATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCT 352 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | |||||||||||||| ||||| || || ||||| || ||||| Sbjct 351 CGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCAT 300 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | | ||||| || | ||| ||| ||||| || ||||| | Sbjct 758 CATT-CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGT 700 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || || ||||| || |||||||| || || || |||||||||| Sbjct 699 CGCTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGG 640 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||| || ||| || ||||| ||||| | | || || | | Sbjct 639 GAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCT 580 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 579 CGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCAT 528 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || ||||| || || || || || || || || ||||||| || | ||| || ||| Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||||| ||||||||||| | || ||| ||| | || ||||| | |||||| Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || || ||||| || ||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 756 >seq108633 Length=9497 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||||||||||||||||| |||||| ||| |||| || ||||||| Sbjct 830 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCCAGATAGCAGAGAGGGACACAGGGAATCTCG 889 Query 25956 TTAATCCTTTCATGCGCGTCACTAAT 25981 ||||||| |||||||||||||||||| Sbjct 890 TTAATCCATTCATGCGCGTCACTAAT 915 >seq103668 Length=8565 Score = 109 bits (120), Expect = 4e-19 Identities = 81/96 (84%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG------GGTAATCTCG 25955 ||||||||||||||||||| |||||||| |||||| || |||| || ||||| | Sbjct 3209 AAGCCCGTTCCCTTGGCTGNGGTTTCGCCAGATAGCNGACAGGGNNGAGAGGGAATCTGG 3150 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||| ||||||||||||||| Sbjct 3149 TTAATCCATTCATGCGCGTCGCTAATTAGATGACGA 3114 >seq12284 Length=22862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| | |||| |||||||| |||||| || || ||| |||| || |||||||| Sbjct 22178 AAGCCTGCTCCCATGGCTGTGTTTTCGCCGGACAGCAGACAGGGACAGAGGAAATCTCGT 22119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 |||||| ||||||||||||||| |||||||| |||| Sbjct 22118 TAATCCATTCATGCGCGTCACTGATTAGATGGCGAT 22083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334456772298509