Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq114236 159 3e-34 seq114234 145 7e-30 seq1613 132 4e-26 >seq114236 Length=889 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || ||| | || || ||||||| ||| | || Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||||| |||||| ||||| ||||| ||||| || || || Sbjct 531 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 472 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| ||||| ||||| | |||||| | |||| ||||| Sbjct 471 GCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTACAA 412 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| || || | || || || || || | |||||||| Sbjct 411 CATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGG 364 Score = 131 bits (144), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||||||| | ||||| | || || ||| | ||| Sbjct 818 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAAACTATCACTTTGGAGGTCGAGGCTTCT 759 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || || | || | ||| || |||||||| ||||| || || Sbjct 758 GACACCATCGA--AAATGTAAAATCGAAGATTCA-AGATAAAGAAGGCATTCCTCCAGAT 702 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||| || ||||| || || || ||||| | ||||| | |||| ||| Sbjct 701 CAACAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTAAGCGACTAC 642 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || | || || || || || || ||||| |||| Sbjct 641 AACATCCAGAAGGAATCGACTTTGCACTTGGTCCTCAGACTGAGAGGTGGAA 590 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||||||| | ||||| | || || ||| | ||| Sbjct 362 ATGCAAATCTTNGTCAAGACTTTGACCGGTAAAACTATCACTNTGGAGGTCGAGGCTTCT 303 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || || | || | ||| || |||||||| ||||| || || Sbjct 302 GACACCATCGA--AAATGTAAAATCGAAGATTCA-AGATAAAGAAGGCATTCCTCCAGAT 246 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||| || ||||| || || || ||||| | ||||| | |||| ||| Sbjct 245 CAACAACGTCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACCCTNAGCGACTAC 186 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || | || || || || || || ||||| |||| Sbjct 185 AACATCCAGAAGGAATCGACTTTGCACTTGGTCCTCAGACTGAGAGGTGGAA 134 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||||||||||||| | || || ||||||| ||| | || Sbjct 135 AATGCAAATCTTCGTCAAGACTTTGACCGGTAAAACTATTACCCTCGAAGTCGAGGCTTC 76 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||||| |||||| ||||| ||||| ||||| || || || Sbjct 75 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGATCA 16 Query 25118 ACAGCG 25123 ||||| Sbjct 15 GCAGCG 10 >seq114234 Length=910 Score = 145 bits (160), Expect = 7e-30 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||||||||||||| | || || ||||||| ||| | || Sbjct 299 AATGCAAATCTTCGTCAANACTTTGACCGGTAAAACTATTACCCTCGAAGTCGAGGCTTC 358 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||||| |||| | ||||||||||| ||||| || || || Sbjct 359 AGACACTATCGATAATGTGAAGCAGAAAANCCAGGACAAAGAAGGCATTCCTCCCGATCA 418 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| ||||| || || | || || | |||| ||||| Sbjct 419 GCAGCGTCTCATCTTNGCNGGCAAGCAATTGGANGACGGCCGNACNCTCAGCGACTACAA 478 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || | || || || || || || ||||| |||| Sbjct 479 CATCCANAANGANTCNACTTTGCACTTGGTCCTGAGACTGAGAGGTGGAA 528 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || |||||||| || ||| |||| || | || || ||| | || Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||||| || || || |||||||| ||||| || || || Sbjct 587 TGACACCATTGATAATGTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGATCA 646 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||||||||| ||||| ||||||| |||||| | |||| ||||| Sbjct 647 ACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTACAA 706 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||||||| || || | || || || || || || ||||| |||| Sbjct 707 CATCCAAAAAGAGTCTACTTTGCACTTGGTCCTCAGACTGAGAGGTGGAA 756 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||||||||||||| | || || ||||||| ||| | || Sbjct 755 AATGCAAATCTTCGTCAAGACTTTGACCGGTAAAACTATTACCCTCGAAGTCGAGGCTTC 814 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| ||||||| |||||| ||||| || || ||||| || || || Sbjct 815 AGACACTATCGATAATGTGAAGCAGAAAATCCAGGACAAGGAGGGCATTCCTCCCGATCA 874 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| | || || || ||||| ||||| || || Sbjct 875 GCAGCGTCTCATCTTCGCTGGCAAGCAATTGGAGGA 910 >seq1613 Length=19885 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| ||||||| ||| |||| || | ||||| ||| | || Sbjct 382 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAAACCATTACTCTTGAAGTCGAGGCTTC 441 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||||| ||||| || |||||||||||||| ||||| || Sbjct 442 CGACACCATCGATAATGTCAAGCAGAAAATTCAGGATAAAGAAGGGATTCCTCCTGATCA 501 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || || || || ||||| || |||| || || | | || ||||| Sbjct 502 GCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGCCGTACCCTCAGTGACTACAA 561 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||| || | || || || || || || ||||| || Sbjct 562 TATCCAAAAAGAATCTACTTTGCACTTGGTCCTGAGACTGAGAGGTGG 609 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || | || || || | ||||| | || || || | || Sbjct 611 ATGCAAATCTTCGTAAAAACCCTCACAGGAAAGACGATCACGCTTGAGGTCGAAGCCTCG 670 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||||| || ||| ||||| ||||| ||||| || || || Sbjct 671 GACACCATCGA-TAACGTCAAGCAGAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 729 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | ||||||| || || | |||| ||||| Sbjct 730 GCAGCGTCTAATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACGCTTAGCGACTACAA 789 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || || ||| | || || Sbjct 790 CATTCAAAAAGAATCTACTCTTCATCTTGTACT 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432693523715285