Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3604 114 2e-20 seq116056 109 1e-18 >seq3604 Length=7407 Score = 114 bits (126), Expect = 2e-20 Identities = 617/967 (64%), Gaps = 52/967 (5%) Strand=Plus/Minus Query 243887 TGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGAT 243946 || || ||||||| | | || ||||| || || ||||| |||||| || |||||| || Sbjct 5266 TGACTTTGGTCGATGTACGGTGCCCGGTCGGCTGCCATTTTGATGATGTTCTTCTGCGAA 5207 Query 243947 ATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGC 244006 ||||| || | || || | ||| | | ||| || | | ||||||||| Sbjct 5206 ATCTCCCACACGGTACGATACAATTCCTTCATATCCTCAGGAATCTGAGGGATGTTCTGA 5147 Query 244007 ACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC-CAAGCG 244065 | ||| || |||| |||| ||||| | || ||||||||| | || | | Sbjct 5146 ATCGATCCGTTGTTTGCGATAAGCTGCAACTTTACGTCATCGTTCCAGATACCTCTTTCT 5087 Query 244066 CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCG 244125 || | | | || || ||| || || | ||| || || || |||||||| || || Sbjct 5086 GTCAAATCCAT-GAGTAGATGCTGATTTACAATCTGGAATTCGCCGGACAGCACACGACG 5028 Query 244126 CTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGT 244185 | ||| | ||||||| || ||||| ||| || | || |||||||| || || || Sbjct 5027 CGTGTAAATGTTGCTGGTGTATGGCTCAATGGCTTCATTATTACCCAGTATTTGAGCAGT 4968 Query 244186 GCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCG 244245 | || || ||||| |||| | ||||||| || | || |||||| | | ||| Sbjct 4967 GGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTACGTACTCCGTGCTTTTTGAT--- 4911 Query 244246 GAGTCTGAGCTCGTTCCA-GTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACA 244304 || ||| ||| | | | | || ||| | | || | | | | |||||||| Sbjct 4910 ----CTT--CTCTTTCAAAGACGCCCAATCCC-ACAAATCAGTGGGGGTCACGCCCCACA 4858 Query 244305 TGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT 244364 ||| |||| | | || | |||||| || ||||| ||| || || |||||| Sbjct 4857 AATCATACTGTAATTGACCTTGGCTGACAGGAGATCCCTCATAGCTCTCATACGGACCG- 4799 Query 244365 CGCGCTGG-GCCAGCTTACAGCTCTC-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | | || || || | || | | ||| | | || || | || ||||||||||| || Sbjct 4798 CTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCG-CGAAATAAATGGTCTCGAATAT 4740 Query 244423 --CATC-TTG---TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 || | ||| |||||| |||| | || | || || || | || ||| || Sbjct 4739 TTCAACGTTGAGCTTCATG------GCCTCGGGGCTGTCAAACGGCATTCGCAACATGAT 4686 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||| |||| || || || ||||| || || ||||| || | ||| | | |||| || Sbjct 4685 AAAGGCGTCCGCGAGCCCTTGCACTCCAATACCGATTGGACGGTGCCTCATGTTCGAATT 4626 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | | |||| || || ||||| ||||| ||| || | ||||| || || || |||| Sbjct 4625 CCTCGCTTGAGGTACAGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATTCCGTGTGAC 4566 Query 244597 CA---TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 | ||| ||| ||| | | ||||| || |||| ||| | || | Sbjct 4565 TACCTTGCACACGTCGTA--CAATTTTTTGAAA-TCATACTT-------TCC--GTCGTT 4518 Query 244654 GGTGATCCTCACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 ||| | || || || | | |||| || || || || ||||||||||| | Sbjct 4517 GGTTA----CATAA---CGGGGCAATGCGATCGAAGCGAGATTACATACGGCCACCTCGT 4465 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 || | ||||||| | |||||||| |||||||| || || ||||| |||||||| | Sbjct 4464 CCTTGCTGGTGTATTCTACAATCTCAGTGCAGAGATTCGAGCTTTTGATCGTGCCCAGAT 4405 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 | ||||| || || |||||| ||||| |||||||||||| | ||| ||||| | Sbjct 4404 TTTTCTGATTTGATTTTTTGTTGCAAGCGTCTTTGTAGAGCATGTACGGCGTACCGGTTT 4345 Query 244833 CGAGCTG 244839 ||| ||| Sbjct 4344 CGATCTG 4338 >seq116056 Length=8111 Score = 109 bits (120), Expect = 1e-18 Identities = 490/761 (64%), Gaps = 48/761 (6%) Strand=Plus/Minus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || | ||| || || || |||||||| || ||| ||| | |||||| || ||| Sbjct 2628 TTTACAATCTGGAATTCGCCGGACAGCACACGTCGCGTGTAAATGTTGCTAGTGTATGGC 2569 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 || ||| || | || |||||||| || || ||| || || ||||| |||| | | Sbjct 2568 TCAATGGCTTCATTATTACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAAC 2509 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA-GTCCCA 244269 |||||| || | || |||||| | | ||| || ||| ||| | | | | Sbjct 2508 AGCAGAGAATTGCGTACTCCGTGCTTTTTGAT-------CTT--CTCTTTCAAAGACGCC 2458 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | | || | | | | |||||||| ||| |||| | | || | ||| Sbjct 2457 CAATCCC-ACAAATCAGTGGGGGTCACGCCCCACAAATCATACTGTAATTGACCTTGGCT 2399 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCT 244388 || || ||||| ||| || || |||||| | | || || || | || | Sbjct 2398 GATAGGAGATCCCTCATAGCTCTCATACGGACCG-CTCTCTTCCGCAAGTTCGCAAGACG 2340 Query 244389 C-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT--CATC-TTG---TTCATGTCGCGG 244441 | ||| | | || || | || ||||||||||| || || | ||| |||||| Sbjct 2339 CTGTCAAAGCCG-CGAAATAAATGGTCTCGAATATTTCAACGTTGAGCTTCATG------ 2287 Query 244442 GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACG 244501 |||| | || | ||| || || | || ||| || ||| |||| |||||||| ||||| Sbjct 2286 GCCTCGGGGCTGTCGAATGGCATTCGCAACATGATAAAGGCGTCCGCCAGTCCTTGCACT 2227 Query 244502 CCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAG 244561 || || ||||| || | ||| | | |||| || | | |||| ||||||||||| || Sbjct 2226 CCAATACCGATCGGACGGTGCCTCATGTTCGAATTCCTCGCTTGAGGCACGGGGTAGTAG 2167 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA---TGCGGACGACGTCGGCCAGC 244618 ||| ||| || | ||||| || || || |||| | ||| ||| ||| | | Sbjct 2166 TTGATGTCAATGATTTTGTTCAGATTCCGTGTGACGACCTTGCACACGTCGTA--CAATT 2109 Query 244619 AGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 ||||| || |||| ||| | || | | ||| ||| || | Sbjct 2108 TTTTGAAA-TCATACTTTCC---ATCGTTGGTTACGT--ATCGGGGCAA------TGCGA 2061 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 ||| || || || || ||||||||||| ||| | ||||||| | |||||||| Sbjct 2060 TCGAAGCG----AGATTACACACGGCCACCTCGTCCTTGCTGGTGTATTCTACAATCTCA 2005 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 |||||||| || || ||||| |||||||| | | ||||| || || |||||| Sbjct 2004 GTGCAGAGATTTGAGCTTTTGATCGTGCCCAGATCTTTTTGATTTGATTTTTTGTTGCAA 1945 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||||| |||||||||||| | ||| ||||| |||| ||| Sbjct 1944 GCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTG 1904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942921050410640