Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8437 147 2e-30 >seq8437 Length=12918 Score = 147 bits (162), Expect = 2e-30 Identities = 380/572 (66%), Gaps = 14/572 (2%) Strand=Plus/Plus Query 20190 TGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACAT 20249 |||| | || ||||| || | || || | || || |||||| | | | ||||||| Sbjct 5714 TGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTCAAATTCGTAACAT 5773 Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 |||||| |||||| || | | |||||||||||| || || || || | || || |||| Sbjct 5774 GAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGGATGCCTAAGCCCA 5833 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGAC 20369 ||||| | || | ||||| |||||||| || ||||| || |||| ||||||||||| | Sbjct 5834 TGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAAACATAAAATTGGC 5893 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 ||| ||||| || || | ||||| | | ||| | ||||| || |||| Sbjct 5894 ATAGAGCATGACACGGGGGTAATGCCATTTGAGGGATATCCTTGGCATTCCATGCGCACA 5953 Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA-TTGG 20488 | || || | || | |||||| || ||| | | || | || ||| ||| Sbjct 5954 TTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGATAACAT-CGGCAAGCTGG 6012 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTC 20548 |||| || | || || || || |||| | ||| ||| | || ||||| || | | Sbjct 6013 TCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTTGGTATTCAGCTCCAAAATGGCGC 6072 Query 20549 CACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTC-TGTGCGCCAGGCCGCGCCC 20607 || || || || ||||| || || | || |||| |||| | | | || | | Sbjct 6073 CATTGAAATCCATAAACCGGACCAAGGTCGCCCT--CTTCGCGATCTGAAAACCCAGACT 6130 Query 20608 GGC-CAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTT----GAA 20662 | ||| || || | ||||| ||| ||||| || | ||| ||||| || Sbjct 6131 TACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATGTGTACT----TTCTTATCCGAG 6186 Query 20663 AGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGC 20722 || ||| | | || |||||||||||| | ||||| | ||| || | || |||||||| | Sbjct 6187 AGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAGTTCCTCCAATACGCCTCTC 6246 Query 20723 CAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 |||||||| |||||||| || || || ||||| Sbjct 6247 CAAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440709973914760