Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq114236 93.3 3e-14 seq114234 91.5 1e-13 >seq114236 Length=889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| | ||| |||| || | || ||| || || |||||||| || || Sbjct 363 ACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTC-GC 421 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| |||||||||||||||||||| || || ||||||||||| | Sbjct 422 TNAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAG 481 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | || || |||||| ||||| ||||| | | | | | || | || ||| Sbjct 482 GAATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGA 541 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || || ||||| || || | || || || |||||||||||| Sbjct 542 CTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 >seq114234 Length=910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| | ||| |||| || | || || || || |||||||| || || Sbjct 526 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTC-GCT 468 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||||||||||||| || || || || ||||||||||| || Sbjct 467 GAGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGG 408 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||||||||| |||| ||||| | | | | | || | || ||| Sbjct 407 AATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGAC 348 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || || ||||| ||||| | || || || |||||||||||| Sbjct 347 TTCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCATT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396481023591478