Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3604 127 2e-24 seq116056 111 2e-19 >seq3604 Length=7407 Score = 127 bits (140), Expect = 2e-24 Identities = 359/549 (65%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || || | ||| ||||| ||| | |||||||| || || | ||||||| |||| Sbjct 3939 GGCACTAACGGAAACTCGAACGGTCTCTTGCCTATGCTGCGTGTTTACAACAACACGGCA 3998 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| ||||| || ||| | ||| ||| | || ||||| || ||||| || Sbjct 3999 CGTTACGTAGACCAAGGCGGTAATAAAAGGCCAGGTGCATTTGCGGTGTACCTCGAACCG 4058 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||||| ||||| || | || | ||| | ||||||| |||||| ||| | Sbjct 4059 TGGCATGCGGATGTCTTTGACTTTTTAGACGCGAAAAAGAACACCGGCAAAGATGAGTCA 4118 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 || || | ||||| |||||||| | ||| | || || | ||||||||||| || || Sbjct 4119 AGAGCTCGGGACCTTTTCTACGCGATGTGGATACCGGATTTGTTTATGAAACGGGTTGAA 4178 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 | || | ||| || ||||| ||||||||| || || |||||||| | Sbjct 4179 AGCAATGGAGATTGGTCGCTATTTTGCCCCAATGAAGCGATTGGTTTGGTCGACGTTTAT 4238 Query 94381 GGATCGCGTTTTGAAGACTTGTATGCTCGTTACG-AATCGCAGGGCAAGGCCAGGAAGGT 94439 || ||||| | | || | || | || |||||| | || |||||| Sbjct 4239 GGTGATGAATTTGATAAGCTTTACGAGAAGTATGAAAAAGCAGGG-AGAGCGAGGAAGAC 4297 Query 94440 TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCC 94499 || | || || |||||| | ||| | || ||| | || || |||||||| Sbjct 4298 AATCAAAGCGCAAAAACTGTGGTACGCCATCATCGAGTCGCAGATCGAAACCGGTACGCC 4357 Query 94500 CTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGAT 94559 ||||| | | ||| ||| || |||| || || || ||| | | || || ||| Sbjct 4358 GTACATGCTCTACAAAGACGCTTGCAACAAAAAATCAAATCAGAAAAATCTGGGCACGAT 4417 Query 94560 CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGT 94619 ||| ||||||||||| ||||| |||||||| || || || ||||||| | || || Sbjct 4418 CAAAAGCTCGAATCTCTGCACTGAGATTGTAGAATACACCAGCAAGGACGAGGTGGCCGT 4477 Query 94620 GTGTAACCT 94628 ||||| || Sbjct 4478 ATGTAATCT 4486 >seq116056 Length=8111 Score = 111 bits (122), Expect = 2e-19 Identities = 359/551 (65%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || ||||| || | ||||||||| ||| | || ||||| || || | || ||| | || Sbjct 1505 GGCACCAACGGAAACTCCAACGGTCTCTTGCCCATGCTGCGTGTTTATAATAACACAGCA 1564 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| ||||| || ||| | ||| ||| | |||||||| || |||||||| Sbjct 1565 CGTTACGTAGACCAAGGCGGTAATAAAAGGCCAGGTGCATTCGCGGTGTACCTCGAGCCG 1624 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||||| ||||| || | || | ||| | ||||||| ||||| ||| Sbjct 1625 TGGCATGCGGATGTCTTTGACTTTTTAGACGCGAAAAAGAACACGGGCAAAGATGAATCA 1684 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||| | ||||| |||||||| | ||| | || || | ||||||||||| || || Sbjct 1685 AGGGCACGGGACCTTTTCTACGCGATGTGGATACCGGATTTGTTTATGAAACGGGTTGAA 1744 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 | || | ||| || ||||| ||||||||| || || |||||| | | Sbjct 1745 AGCAATGGGGATTGGTCGCTATTTTGCCCCAATGAAGCGATAGGTTTGGTCGACGTATAT 1804 Query 94381 G--GATCGCGTTTTGAAGACTTGTATGCTCGTTACG-AATCGCAGGGCAAGGCCAGGAAG 94437 | ||| | | ||||| | | || | || | || |||||| | || |||||| Sbjct 1805 GGTGAT-GAG-TTTGATAAGCTCTACGAGAAGTATGAAAAAGCAGGG-AGAGCGAGGAAG 1861 Query 94438 GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACG 94497 || | || || || ||| | ||| | || ||| | || || |||||| Sbjct 1862 ACAATCAAAGCGCAAAAACTATGGTACGCCATCATCGAGTCGCAGATCGAAACCGGTACG 1921 Query 94498 CCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTG 94557 || ||||| | | ||| ||| || |||| || || || || | | || || | Sbjct 1922 CCGTACATGCTCTACAAAGACGCTTGCAACAAAAAATCAAATCAAAAAGATCTGGGCACG 1981 Query 94558 ATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCT 94617 ||||| ||||| ||||| ||||| |||||||| || || || ||||||| | || Sbjct 1982 ATCAAAAGCTCAAATCTCTGCACTGAGATTGTAGAATACACCAGCAAGGACGAGGTGGCC 2041 Query 94618 GTGTGTAACCT 94628 |||||||| || Sbjct 2042 GTGTGTAATCT 2052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493980255618440