Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3604 221 2e-52 seq116056 187 4e-42 >seq3604 Length=7407 Score = 221 bits (244), Expect = 2e-52 Identities = 512/760 (67%), Gaps = 10/760 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 ||||| |||||||||||||| | | || ||| | ||| ||||| ||||| |||||| Sbjct 5407 TCCACTGTGAACTGAATGGCTTGAGCTGCTGGCTTCGTTCGAAGATAATACATCCCGGTC 5348 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || || || ||||||||| | |||||| || ||| |||| ||| || || Sbjct 5347 TTGAGTCCGACCTTCCACCCGTAAAAATGCATGCTAGTCAGCTTGCCGTAGTTAGGCTCC 5288 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 || ||||||||||||| | || |||||||||||| | || ||||| || || ||||| Sbjct 5287 GCGATGTGAATGTTCAAACTTTGACTTTGGTCGATGTACGGTGCCCGGTCGGCTGCCATT 5228 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGA 204082 ||||| ||| |||||||||||||||||||||| || ||| || | | | | | Sbjct 5227 TTGATGATGTTCTTCTGCGAAATCTCCCACACGGTACGATACAATTCCTTCATATCCTCA 5168 Query 204083 GGCACATCT-TCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || |||| | || ||| ||||| ||||||| || || || || | | | Sbjct 5167 GG--AATCTGAGGGATGTTCTGAATCGATCCGTTGTTTGCGATAAGCTGCAACTTTACGT 5110 Query 204141 CCTCCCCCCACATGCC-CAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| || || | ||| ||| ||| | || || | || | ||||| Sbjct 5109 CATCGTTCCAGATACCTCTTTCTG-TCAAATCCATGAGTAGATGCTGATTTACAATCTGG 5051 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || ||||||||||| | || ||| | | |||| ||||| |||| || | || || Sbjct 5050 AATTCGCCGGACAGCACACGACGCGTGTAAATGTTGCTGGTGTATGGCTCAATGGCTTCA 4991 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 || || || | || ||||| ||| || || ||||| || || | ||||| || || Sbjct 4990 TTATTACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTA 4931 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379 || || |||| |||| || | | |||| ||| | ||| || || || |||| Sbjct 4930 CGTACTCCGTGCTTTTTGATCTTCTCTTTCAAAGACGCCCAATCCCACAAATCAGTGGGG 4871 Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTC 204439 |||||||||||| || |||| || ||||| ||||| || |||| || || Sbjct 4870 GTCACGCCCCACAAATCATACTGTAATTGACCTTGGCTGACAGGAGATCCCTCATAGCTC 4811 Query 204440 GGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGC-GGCCATGGCGTGATAGTACA 204497 ||| || | | | |||||| || || | ||| || || | | | | || || | || | Sbjct 4810 TCATACGGACCGCT-CTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGA-AATAAA 4753 Query 204498 TGGTCTCAAAGATCTGAACGTTTAATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCA 204557 ||||||| || || | |||||| | | |||||| | | |||||||| || | || Sbjct 4752 TGGTCTCGAATATTTCAACGTTGAGCTTCATGGCCTCGGGGCTGTCAAACGGCATTCGCA 4693 Query 204558 GCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCC 204597 |||| ||| ||||||| | || |||||||| || || Sbjct 4692 ACATGATAAAGGCGTCCGCGAGCCCTTGCACTCCAATACC 4653 Score = 86.0 bits (94), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 205265 TCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGG 205324 || || |||||||| || | |||| || | ||| |||||||| || || || || ||| Sbjct 4069 TCCGCATGCCACGGTTCGAGGTACACCGCAAATGCACCTGGCCTTTTATTACCGCCTTGG 4010 Query 205325 TCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTC 205384 || || || | | | |||| |||| |||||||| |||| |||||||| | | | Sbjct 4009 TCTACGTAACGTGCCGTGTTGTTGTAAACACGCAGCATAGGCAAGAGACCGTTCGAGTTT 3950 Query 205385 CCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATC 205444 ||||| |||| ||| ||| ||| || | |||||| ||| | |||||| Sbjct 3949 CCGTTAGTGCCTGCGATATAACTGCCGCTAGCTCTAATGTTGGAAATGCTCAATCCAATC 3890 Query 205445 CCGCCAGAACACTTGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGAT 205503 ||||||| | |||| ||| | ||||||| ||| || || ||||||||| |||| Sbjct 3889 CCGCCAGCAGTTTTGGAGATAAGAGCGCACTGCTTTAAG-GTTTCGTAGATGCCATCGAT 3831 Query 205504 G 205504 | Sbjct 3830 G 3830 >seq116056 Length=8111 Score = 187 bits (206), Expect = 4e-42 Identities = 508/766 (66%), Gaps = 10/766 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 ||||| |||||||| ||||| | | || ||| | ||| ||||| ||||| || ||| Sbjct 2973 TCCACTGTGAACTGGATGGCTTGAGCCGCCGGCTTCGTTCGAAGATAATACATCCCCGTC 2914 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || || || ||||||||| | |||||| | || |||| ||| || ||| Sbjct 2913 TTGAGTCCGACCTTCCACCCGTAAAAATGCATGCTGGTCAACTTGCCGTAGTTAGGCTCG 2854 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 || ||||||||||||| | || |||||||||||| | || ||||| || || ||||| Sbjct 2853 GCGATGTGAATGTTCAAACTTTGACTTTGGTCGATGTACGGTGCCCGGTCGGCAGCCATT 2794 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGA 204082 ||||| ||| |||||||||||||||||||||| || ||| | | | | | | Sbjct 2793 TTGATGATGTTCTTCTGCGAAATCTCCCACACGGTACGATACAATTTCTTCATATCCTCA 2734 Query 204083 GGCACATCT-TCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || |||| | || || ||||| ||||||| || || || || | | | Sbjct 2733 GG--AATCTGAGGGATGTTTTGAATCGAACCGTTGTTAGCGATGAGCTGCAACTTTACAT 2676 Query 204141 CCTCCCCCCACATGCC-CAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| || || | ||| ||| ||| | | | | || | ||||| Sbjct 2675 CATCGTTCCAGATACCTCTTTCTG-TCAAATCCATGAGTAAACGCTGATTTACAATCTGG 2617 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || ||||||||||| | ||| ||| | | |||| | ||| |||| || | || || Sbjct 2616 AATTCGCCGGACAGCACACGTCGCGTGTAAATGTTGCTAGTGTATGGCTCAATGGCTTCA 2557 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 || || || | || ||||| ||| || || ||||| || || | ||||| || ||| Sbjct 2556 TTATTACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTG 2497 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379 || || |||| |||| || | | |||| ||| | ||| || || || |||| Sbjct 2496 CGTACTCCGTGCTTTTTGATCTTCTCTTTCAAAGACGCCCAATCCCACAAATCAGTGGGG 2437 Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTC 204439 |||||||||||| || |||| || ||||| |||| || |||| || || Sbjct 2436 GTCACGCCCCACAAATCATACTGTAATTGACCTTGGCTGATAGGAGATCCCTCATAGCTC 2377 Query 204440 GGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGC-GGCCATGGCGTGATAGTACA 204497 ||| || | | | |||||| || || | ||| || || | | | | || || | || | Sbjct 2376 TCATACGGACCGCT-CTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGA-AATAAA 2319 Query 204498 TGGTCTCAAAGATCTGAACGTTTAATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCA 204557 ||||||| || || | |||||| | | |||||| | | ||| || | || | || Sbjct 2318 TGGTCTCGAATATTTCAACGTTGAGCTTCATGGCCTCGGGGCTGTCGAATGGCATTCGCA 2259 Query 204558 GCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||| ||| ||||||||| || |||||||| || || | ||| Sbjct 2258 ACATGATAAAGGCGTCCGCCAGTCCTTGCACTCCAATACCGATCGG 2213 Score = 87.8 bits (96), Expect = 3e-12 Identities = 235/353 (67%), Gaps = 5/353 (1%) Strand=Plus/Minus Query 205155 CTTTCA-CCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCC 205213 |||||| ||| | |||||||| || ||||||| |||| || || || || ||| Sbjct 1746 CTTTCAACCCGTTTCATAAACAAATCCGGTATCCACATCGCGTAGAAAAGGTCCCGTGCC 1687 Query 205214 CTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTG 205272 || | | || | || |||||||||| ||| | ||| | | | || || || Sbjct 1686 CTTGATTCATCTTTGCCCGTGTTCTTTTTCGCGTCTAAA-AAGTCAAAGACATCCGCATG 1628 Query 205273 CCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCAT 205332 ||||||||| | |||| || | ||| |||||||| || || || || ||||| || Sbjct 1627 CCACGGCTCGAGGTACACCGCGAATGCACCTGGCCTTTTATTACCGCCTTGGTCTACGTA 1568 Query 205333 GCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 || | | || |||| |||||||| |||| |||||||||| | | ||||| || Sbjct 1567 ACGTGCTGTGTTATTATAAACACGCAGCATGGGCAAGAGACCGTTGGAGTTTCCGTTGGT 1508 Query 205393 GCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGA 205452 || ||| ||| ||| || | |||||| ||| | ||||||||||||| Sbjct 1507 GCCTGCGATATAACTGCCGCTAGCTCTAATGTTGGAAATGCTCAATCCAATCCCGCCAGC 1448 Query 205453 ACACTTGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATG 205504 | |||| ||| | ||||||| ||| || || ||||||||| ||||| Sbjct 1447 AGTTTTGGAGATAAGAGCGCACTGCTTTAAG-GTTTCGTAGATGCCATCGATG 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793961085617840