Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1613 156 1e-32 seq114236 131 4e-25 seq114234 129 1e-24 seq2597 125 2e-23 seq41383 114 3e-20 >seq1613 Length=19885 Score = 156 bits (172), Expect = 1e-32 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCCATC 199476 || ||||| || ||||| || || ||||| | ||||||||| || || || | ||||| Sbjct 822 AGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTC-GCTAAGCGTACGGCCATC 764 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||||||||| ||||||||||| || ||| ||| ||||| || Sbjct 763 TTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTC 704 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||||| ||| |||| |||||| | | ||| || || | ||||||||| Sbjct 703 TTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGATCGT 644 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| || || ||||| Sbjct 643 CTTTCCTGTGAGGGTTTTTACGAAGATTTG 614 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || || ||| | ||| | |||||| |||||||||| ||||||||| | || | || Sbjct 370 TCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCC 311 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || ||||||||||||||||| || || ||| || ||||| Sbjct 310 ATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCTTCCTT 251 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| || || ||||| || |||| |||||| | | || || |||| ||||| Sbjct 250 GTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACCTCCAGAGTGAT 191 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || ||||| ||||| Sbjct 190 GGTTTTACCGGTAAGAGTCTTGACAAAGATTTG 158 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||||||| | ||| | ||| || || ||||||| ||||||||| | || | Sbjct 600 AGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTGAGGGTACGG 541 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| ||||| || |||||||| ||||| ||||| || ||| ||| |||||| Sbjct 540 CCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATCCCTTCT 481 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||||||| || ||||| || |||| |||||| | | || || || | || Sbjct 480 TTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACTTCAAGAGTA 421 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| ||||| || Sbjct 420 ATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTG 386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| || ||||| |||| ||||||||| | || | ||||| Sbjct 138 AGAACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 79 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || |||||||||||||||||||| || ||| ||| ||||| ||| Sbjct 78 TCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 19 Query 199538 TGAATCTTTTGCTTCAC 199554 || || || |||||||| Sbjct 18 TGGATTTTCTGCTTCAC 2 >seq114236 Length=889 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | ||| | |||||| ||||| |||| ||||||||| | || | Sbjct 601 AGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGG 660 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||||| |||||| ||||||||||| ||||| || || || ||| ||| |||||| Sbjct 661 CCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCT 720 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| || || ||||| |||||| | | || || ||||| ||| Sbjct 721 TTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCAAAGTG 780 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | ||| || ||||| ||||| Sbjct 781 ATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTG 815 Score = 125 bits (138), Expect = 2e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | ||| | |||||| ||||| |||| ||||||||| | || | Sbjct 145 AGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTNAGGGTGCGG 204 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||||| |||||| ||||||||||| ||||| || || || ||| ||| |||||| Sbjct 205 CCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCT 264 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| || || ||||| |||||| | | || || |||| ||| Sbjct 265 TTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCANAGTG 324 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | ||| || || || ||||| Sbjct 325 ATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTG 359 Score = 120 bits (132), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || | ||| | ||| ||||| ||||||| ||||||||| | ||| | || Sbjct 375 TCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTNAGAGTGCGGCC 434 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| ||||| ||||||||||||||||| || ||| ||| ||||| Sbjct 435 GTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCCTT 494 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| || || |||||||| |||| ||||||| | || || || | || || Sbjct 495 GTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAAT 554 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | ||| || || || ||||| Sbjct 555 AGTTTTGCCTGTCAAAGTCTTGACGAAGATTTG 587 >seq114234 Length=910 Score = 129 bits (142), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| | ||| ||||| ||||||| ||||||||| | ||| | || Sbjct 287 TCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCC 228 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| |||||||||||||||||||| || || ||| ||| |||||| Sbjct 227 GTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTT 168 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||||| || || | |||||| | | || || ||||| || || Sbjct 167 ATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAAT 108 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | |||||| || || ||||| Sbjct 107 GGTTTTGCCTGTCAAAGTTTTGACGAAGATTTG 75 Score = 118 bits (130), Expect = 2e-21 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||||||| | ||| | ||| || || || |||| ||||||||| | || | Sbjct 517 AGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTGTAGTCGCTGAGNGTNCGG 458 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || |||| ||||| || || ||||||||||||||||| || ||| ||| |||||| Sbjct 457 CCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCT 398 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| | || |||||||| |||| ||||||| | || || || | || Sbjct 397 TTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTA 338 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || | ||| || || || ||||| Sbjct 337 ATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTG 303 >seq2597 Length=9084 Score = 125 bits (138), Expect = 2e-23 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || ||||| |||||||| ||||||||||| | |||||||||| ||| || || ||| Sbjct 3339 CTAAGTACAAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCACTCAAGGTTCTGCCA 3398 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||| |||||||| |||||||||||||||||||| || ||| ||||||| Sbjct 3399 TCTTCCAATTGCTTTCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATTCCT 3452 >seq41383 Length=7190 Score = 114 bits (126), Expect = 3e-20 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199428 GGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCT 199487 ||||||| ||||||||||| | |||||||||| ||| || || |||||||||| |||| Sbjct 750 GGAGAGTAGACTCCTTTTGAATGTTGTAGTCACTCAAGGTTCTGCCATCTTCCAATTGCT 809 Query 199488 TTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| |||||||||||||||||||| || ||| ||||||| Sbjct 810 TTCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATTCCT 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177106908454313