Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq114236 120 3e-22 seq114234 113 5e-20 seq1613 113 5e-20 >seq114236 Length=889 Score = 120 bits (132), Expect = 3e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | || |||| ||||| ||| ||| |||||||| ||||||||| Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || | ||||||||||| || || | |||||||| |||| || Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| ||| |||| ||| | | | | ||||| | || || Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || |||||||| |||| || || || |||||||||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 >seq114234 Length=910 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| ||| ||| |||||||| ||||||||| |||||||| |||| || Sbjct 280 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCTTCC 221 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||||||||| || | ||||| || |||| || | || || || || Sbjct 220 AATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 161 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||||| ||||| | | | ||||| | || || |||| || ||||||||| Sbjct 160 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 101 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||| || |||||||||||| Sbjct 100 CCTGTCAAAGTTTTGACGAAGATTTGCATT 71 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| ||| ||| |||||||| ||||||||| |||||||| | || || Sbjct 736 ACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCC 677 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||||| || |||| ||||| || |||| || | || || || || Sbjct 676 AATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGA 617 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||||| ||||| | | | ||||| | || || |||| || ||||||||| Sbjct 616 ATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTG 557 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||| || |||||||||||| Sbjct 556 CCTGTCAAAGTTTTCACGAAGATTTGCATT 527 >seq1613 Length=19885 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || ||||| |||| ||||| || ||||||||||| ||||||||| Sbjct 381 CCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGCTG 322 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | |||||||| ||||| || | ||||| || |||| || Sbjct 321 AGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGAGGG 262 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||| |||| ||||| | | | ||||| | || || Sbjct 261 ATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCAACC 202 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || || || |||||||||||||| Sbjct 201 TCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || |||| | ||| | || ||||| | ||| || ||||| || ||||| Sbjct 844 TTATTGCCCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTA 785 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || || || | || || ||||||||||||||||| || | |||||||| || Sbjct 784 GTCGCTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATC 725 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||||| |||||||| ||||| | | | ||||| | Sbjct 724 TGGAGGAATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGC 665 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || | |||||| || || || || || ||||| || ||||||||||| Sbjct 664 TTCGACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564389560298280