Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3604 279 6e-70 >seq3604 Length=7407 Score = 279 bits (308), Expect = 6e-70 Identities = 1187/1878 (63%), Gaps = 32/1878 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 ||||| || |||| ||| | | | |||| || ||||| | ||||||||| || ||| Sbjct 5407 TCCACTGTGAACTGAATGGCTTGAGCTGCTGGCTTCGTTCGAAGATAATACATCCCGGTC 5348 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | || | |||| || || |||||||| ||||| | || || |||| || Sbjct 5347 TTGAGTCCGACCTTCCACCCGTAAAAATGCATGCTAGTCAGCTTGCCGTAGTTAGGCTCC 5288 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | || ||||| || | | |||||| || || || | | | | || |||||||| Sbjct 5287 GCGATGTGAATGTTCAAACTTTGACTTTGGTCGATGTACGGTGCCCGGTCGGCTGCCATT 5228 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 | | || | | || | |||||||| || || ||| | || || || || || Sbjct 5227 TTGATGATGTTCTTCTGCGAAATCTCCCACACGGTACGATACAATTCCTTCATATCCTCA 5168 Query 47217 GGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgttttttaattca 47273 || | | || | || ||||| ||||| |||| | |||| | |||| ||| Sbjct 5167 GGAATCTGAGGGATGTTCTGAATCGATCCGTTGTTTGCGATAAGCTGCAACTTTACGTCA 5108 Query 47274 tttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAAT 47333 | ||| | || ||| || || | | ||||| |||| ||||| || ||| Sbjct 5107 TCGTTCCAGATACCTCTTTCTGTCAAATCCATGAGTAGATGCTGATTTACAATCTGGAAT 5048 Query 47334 TCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTA 47393 || || || || || | ||| | || || || || || ||||| || || | ||||||| Sbjct 5047 TCGCCGGACAGCACACGACGCGTGTAAATGTTGCTGGTGTATGGCTCAATGGCTTCATTA 4988 Query 47394 TTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTT 47453 || || | ||||||||||| |||||||| ||||| | || | | | ||| | | Sbjct 4987 TTACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTACGT 4928 Query 47454 ACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACA 47513 ||||| | |||| |||| ||||||||| | ||| | || Sbjct 4927 ACTCCGTGCTTTTTGATCTTCTCTTTCAAAGACGCCCAATCCCACAAATCAGTGGGGGTC 4868 Query 47514 ACATTCCAAAAATCATATTGAAGAATT--CCTTTACTTATCGGAGAACCATTATATGTTT 47571 || ||| |||||||| || | ||| |||| || | ||||| || | ||| | | Sbjct 4867 ACGCCCCACAAATCATACTGTA--ATTGACCTTGGCTGACAGGAGATCCCTCATAGCTCT 4810 Query 47572 TATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTG 47631 ||| |||||| || || ||||| ||| ||| ||| || |||| || | Sbjct 4809 CATACGGACCGCTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGAAATAAATGG 4750 Query 47632 TTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNN 47691 | || ||||||| | ||| || ||| | || || | ||||| || Sbjct 4749 TCTCGAATATTTCAACGTTGAGCTTCATGGCCTCGGGGCTGTCAAACGGCATTCGCAACA 4690 Query 47692 NNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAG 47751 || | || || | ||||| || |||||||| ||||| | || | | || | Sbjct 4689 TGATAAAGGCGTCCGCGAGCCCTTGCACTCCAATACCGATTGGACGGTGCCTCATGTTCG 4630 Query 47752 AAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNN 47811 || | |||| |||| || || | ||| || || || ||||| || ||| Sbjct 4629 AATTCCTCGCTTGAGGTACAGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATTCCGTG 4570 Query 47812 NNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTT---GTTATTTATAACAA 47868 | || ||||| || |||||| |||| || || | ||| Sbjct 4569 TGACTACCTTGCACACGTCGTACAATTTTTTGAAATCATACTTTCCGTCGTTGGTTACAT 4510 Query 47869 ACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATA 47926 | | | ||| || || || ||||||||||| || ||||| | ||| | || || Sbjct 4509 AACGGGGCAATGCGATCGAAGCGAGATTACATACGGCCACCTCGTCCTTGC--TGGTGTA 4452 Query 47927 TTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--A 47984 || || || |||| || ||||| | |||||| || |||| ||||| ||||| | Sbjct 4451 TTCTACAATCTCAGTGCAGAGATTCGAGCTTTTGATCGTGCCCAGATTTTTCTGATTTGA 4392 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 || ||||| || ||||| ||||| ||||| | || || || ||||| ||||| || Sbjct 4391 TTTT--TTGTTGCAAGCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTGCGAC 4334 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCT--CTAGCTTTATTATCAT 48102 || ||||| | | ||| |||| | || || | || || ||| | | | Sbjct 4333 TCGATGATGGCGTACCA--CAGTTTTTGCGCTTTGATTGTCTTCCTCGCTCTCCCTGCTT 4276 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 ||| || || || | ||| ||||||||||| ||||| || | | || ||| Sbjct 4275 TTTCATACTTCTCGTAAAGCTTATCAAATTCATCACCATAAACGTCGACCAAACCAATCG 4216 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 |||||| || || | | |||||||| ||| ||| || | ||||||| | || Sbjct 4215 CTTCATTGGGGCAAAATAGCGACCAATCTCCATTGCTTTCAACCCGTTTCATAAACAAAT 4156 Query 48223 CTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 | |||||||| | || || ||| | |||| || |||| || || ||||| | ||| Sbjct 4155 CCGGTATCCACATCGCGTAGAAA-AGGTCCCGAGCTCTTGACTCATCTTTGCCGGTGTTC 4097 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 |||| || | |||||| | | ||| |||||||| ||||| | || | || | | Sbjct 4096 TTTTTCGCGTCTAAAAAGTCAAAGACATCCGCATGCCACGGTTCGAGGTACACCGCAAAT 4037 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 ||||||| | ||||||||| ||||| |||| || | || || ||||| ||||| | Sbjct 4036 GCACCTGGCCTTTTATTACCGCCTTGGTCTACGTAACGTGCCGTGTTGTTGTAAACACGC 3977 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 | ||| || | | ||| || || | || || || || | |||||||| || |||||| Sbjct 3976 AGCATAGGCAAGAGACCGTTCGAGTTTCCGTTAGTGCCTGCGATATAACTGCCGCTAGCT 3917 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 || || || ||| | || || || || || |||| || || ||||| ||| | Sbjct 3916 CTAATGTTGGAAATGCTCAATCCAATCCCGCCAGCAGTTTTGGAGATAAGAGCGCACTGC 3857 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || | ||| || || || || || || || |||||| ||| |||| ||| ||||| Sbjct 3856 TTTAAGGTTTCGTAGATGCCATCGATGCTGTCATCTTGCATCGCCAATAAAAAGCAACTG 3797 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 || | ||| || | || || | || |||| || || || ||||| | ||||| Sbjct 3796 GATAATTGAGGTCTATTGGTGCCAGCGTTGAATAGAGTGGGTGACGCATGGGTGAACCAC 3737 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATAT----CCCATTGATGTAT 48697 ||||| || | | || || ||||||||| | ||| |||| |||| |||| Sbjct 3736 TTCTCAGACATAAGATTGTAGGTTTCAATAGCGCGATCGATATTTTCGCCATGGATG--- 3680 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 || || || || | ||||| ||| | ||| || | ||| | | ||| ||| | ||| Sbjct 3679 -CCGATGGAGACTCTCATTAGCATGTGTTGCGGGCGTTCGGCCACTTTACCATTAAGTTT 3621 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 ||| || ||||| | || | |||||||| || || ||||| || || || || ||| Sbjct 3620 CAACAGGTATGACCTCTCTAGCGTTTTAAAGCCGAAGTAGTTATACGAGAAATCCCGATC 3561 Query 48818 ATTAATAATTGATGAATT 48835 | |||||| | ||||| Sbjct 3560 GTAAATAATGGCCGAATT 3543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561264660135960