Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8437 208 6e-49 >seq8437 Length=12918 Score = 208 bits (230), Expect = 6e-49 Identities = 442/650 (68%), Gaps = 20/650 (3%) Strand=Plus/Plus Query 29747 TCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC-AGC 29805 |||| |||| |||| ||| || || ||||| ||||| | || || || ||||| | Sbjct 5639 TCCTCGTTATGCTCAATGTCGGGAACGGTCTTGGCTCACGCTTCAGTTGT-TCTTCGATT 5697 Query 29806 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 29865 | ||| ||||||| | ||| || ||||| || || | || || || || || || ||| Sbjct 5698 GCTTCAACGTGATTCGTGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGT 5757 Query 29866 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29925 | | || || ||||| ||||| |||||||| | || ||||||||||| || || Sbjct 5758 TTCAAATTCGTAACATGAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAAC 5817 Query 29926 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG 29985 || | || | |||||||| | || | || || |||||||| || |||||||| || Sbjct 5818 GGGATGCCTAAGCCCATGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCA 5877 Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTT 30043 || ||||| || || | | || ||||| || | |||| ||||| | || | Sbjct 5878 GAAACATAAAATTGGCATAGAGCATGACACGGGGGTAATGCCATTTGAGG--GATATCCT 5935 Query 30044 TGGGGTTCCAGGCGCACACGATGATGCGCCTG-TCTTC----TGGGTTGT-TCCTGATGA 30097 ||| ||||| ||||||| || || |||||| | ||| ||| |||| || || ||| Sbjct 5936 TGGCATTCCATGCGCACATTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGA 5995 Query 30098 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30157 | |||| ||||| || || || | || | ||| || || |||||| Sbjct 5996 TAACATCGGC------AAGCTGGTCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTT 6049 Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 ||| || ||||| ||||| | ||| || || || || ||||| || ||||| ||||||| Sbjct 6050 GGTATTCAGCTCCAAAATGGCGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTT 6109 Query 30218 CCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 | | | || || ||| ||| || ||| ||| | || ||||| || ||||| || Sbjct 6110 CGC-GATCTGAAAACCCAGACTTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATG 6168 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | ||| ||| || ||||| || || | ||| || ||| | | |||||||| ||| Sbjct 6169 TGTACTTTCTTATCCGAGAGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAGT 6228 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 ||||||| ||| | ||||||| || | ||| |||||||| | ||||| Sbjct 6229 TCCTCCAATACGCCTCTCCAAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408019304536247