Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq114234 122 7e-23 seq114236 102 6e-17 seq1613 93.3 3e-14 >seq114234 Length=910 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||||||||| || ||||| || ||| | || | || ||||| ||||| |||||||| Sbjct 719 CTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAA 660 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||||||||| | |||| ||| || || || |||||| || || ||| Sbjct 659 GATCAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATT 600 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||| ||||||| ||||| ||||| || ||||||||||| || Sbjct 599 ATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCAC 540 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 539 GAAGATTTGCAT 528 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||||||||| || ||||| || ||| | || |||| ||||| ||||| ||||| || Sbjct 263 CTCTTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAA 204 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||||||||| | |||| ||| || || || |||||| || || ||| Sbjct 203 GATGAGACGCTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATT 144 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||| ||||||| ||||| ||||| || ||||||||||| || Sbjct 143 ATCAATGGTGTCAGAAGCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGAC 84 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 83 GAAGATTTGCAT 72 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || || || || || ||||| ||||| | |||| |||||||||| Sbjct 910 TCCTCCAATTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTG 851 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || || || ||| | | | || ||||| ||||| || || | ||||| Sbjct 850 TCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACTTCGAGGGTAATA 791 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| || || || || ||||| Sbjct 790 GTTTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 756 >seq114236 Length=889 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || ||| | || |||| ||||||||||||||||| || Sbjct 628 TCCTTCTGGATGTTGTAGTCGCTTAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAG 687 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| ||| || || || |||||| ||||||| Sbjct 688 ATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTT 747 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| ||||||| || || ||||| || |||||||| || ||| Sbjct 748 TCGATGGTGTCAGAAGCCTCGACCTCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACA 807 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 808 AAGATTTGCAT 818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 |||| ||||||||||||||||| || || || || |||||||| | |||| ||| || | Sbjct 206 CGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCTT 265 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 | || |||||| ||||||| | | | || || ||||| ||||||| || | Sbjct 266 TATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACCTCCANAGTGA 325 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || |||||||| || || || || ||||| Sbjct 326 TAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 >seq1613 Length=19885 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| |||||||| ||| || | || | || ||||| |||||||| || || Sbjct 573 TCTTTTTGGATATTGTAGTCACTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAG 514 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||| | |||| || || || || ||| || || || ||| | Sbjct 513 ATAAGACGTTGCTGATCAGGAGGAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTA 454 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| || || | ||||| |||||||| |||| ||| || || Sbjct 453 TCGATGGTGTCGGAAGCCTCGACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACG 394 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 393 AAAATCTGCAT 383 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| || || | || | || |||| |||||| ||||| || Sbjct 801 TCTTTTTGAATGTTGTAGTCGCTAAGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAG 742 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||| | |||| ||| |||||||| ||||| || || || | Sbjct 741 ATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTA 682 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || ||||| | ||| ||||| ||||| || | |||||||| Sbjct 681 TCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACG 622 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 621 AAGATTTGCAT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380379833427897