Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq116056 147 4e-30 seq3604 129 1e-24 >seq116056 Length=8111 Score = 147 bits (162), Expect = 4e-30 Identities = 319/473 (67%), Gaps = 31/473 (7%) Strand=Plus/Minus Query 221377 CTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGAT 221436 ||| || |||||| | ||| || | |||||||| |||| || ||| || || Sbjct 2377 CTCATACGGACCGCTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGAAATAAAT 2318 Query 221437 GGTCTCAAAGAT--CATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGT-GAAGGGCATACG 221493 |||||| || || || | |||||| || |||||||||| | || ||| ||||| || Sbjct 2317 GGTCTCGAATATTTCAAC--GTTGAGCTTCATGGCCTCGGG-GCTGTCGAATGGCATTCG 2261 Query 221494 CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCT 221553 || ||| |||| |||| |||||||| || ||||| |||||||| || | ||| ||| | Sbjct 2260 CAACATGATAAAGGCGTCCGCCAGTCCTTGCACTCCAATACCGATCGGACGGTGCCTCAT 2201 Query 221554 GTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTT 221613 ||| ||| ||||| |||||||| || |||||| ||| || | ||||| || || Sbjct 2200 GTTCGAATTCCTCGCTTGAGGCACGGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATT 2141 Query 221614 CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCC 221673 | | |||| ||| || ||| ||| || || | |||| | ||| || | Sbjct 2140 CCGTGTGACGACCTTGCACACGTCGTACAATTTTT------TGAAATCATACTTTCCATC 2087 Query 221674 GTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG-----GCCAGGTTACACACG 221728 || | ||| | | || |||||| || || || ||||||||| Sbjct 2086 GTTG-------GTTACGTAT---CG----GGGCAATGCGATCGAAGCGAGATTACACACG 2041 Query 221729 GCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATG 221788 ||||||||||||||| |||| || | || ||||| || ||||| || || ||||| Sbjct 2040 GCCACCTCGTCCTTGCTGGTGTATTCTACAATCTCAGTGCAGAGATTTGAGCTTTTGATC 1981 Query 221789 GTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 || ||||| | || ||||| || || ||| |||||| ||||||||||| Sbjct 1980 GTGCCCAGATCTTTTTGATTTGATTTTTTGTTGCAAGCGTCTTTGTAGAGCAT 1928 >seq3604 Length=7407 Score = 129 bits (142), Expect = 1e-24 Identities = 315/473 (67%), Gaps = 31/473 (7%) Strand=Plus/Minus Query 221377 CTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGAT 221436 ||| || |||||| | ||| || | |||||||| |||| || ||| || || Sbjct 4811 CTCATACGGACCGCTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGAAATAAAT 4752 Query 221437 GGTCTCAAAGAT--CATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG-GGCATACG 221493 |||||| || || || | |||||| || |||||||||| | || || ||||| || Sbjct 4751 GGTCTCGAATATTTCAAC--GTTGAGCTTCATGGCCTCGGG-GCTGTCAAACGGCATTCG 4695 Query 221494 CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCT 221553 || ||| |||| |||| || || || || ||||| |||||||| || | ||| ||| | Sbjct 4694 CAACATGATAAAGGCGTCCGCGAGCCCTTGCACTCCAATACCGATTGGACGGTGCCTCAT 4635 Query 221554 GTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTT 221613 ||| ||| ||||| || || || || |||||| ||| || | ||||| || || Sbjct 4634 GTTCGAATTCCTCGCTTGAGGTACAGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATT 4575 Query 221614 CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCC 221673 | | |||| || || ||| ||| || || | |||| | ||| ||| | Sbjct 4574 CCGTGTGACTACCTTGCACACGTCGTACAATTTTT------TGAAATCATACTTTCCGTC 4521 Query 221674 GTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG-----GCCAGGTTACACACG 221728 || | ||| || || || |||||| || || || ||||| ||| Sbjct 4520 GTTG-------GTTACATAA---CG----GGGCAATGCGATCGAAGCGAGATTACATACG 4475 Query 221729 GCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATG 221788 ||||||||||||||| |||| || | || ||||| || ||||| || || ||||| Sbjct 4474 GCCACCTCGTCCTTGCTGGTGTATTCTACAATCTCAGTGCAGAGATTCGAGCTTTTGATC 4415 Query 221789 GTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 || ||||| | || ||||| || || ||| |||||| ||||||||||| Sbjct 4414 GTGCCCAGATTTTTCTGATTTGATTTTTTGTTGCAAGCGTCTTTGTAGAGCAT 4362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927449918932160