Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq114234 125 1e-23 seq114236 114 2e-20 seq1613 107 3e-18 >seq114234 Length=910 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| |||| |||||| || || Sbjct 763 ATTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTG 704 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | || | ||| || ||||| || |||||||| || | | ||||||| Sbjct 703 TAGTCGCTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGA 644 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| || || || | ||| ||| || || ||| Sbjct 643 TCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAA 584 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| || || | ||| || ||||| ||||| | ||||| || || ||||||||| Sbjct 583 GCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 120 bits (132), Expect = 5e-22 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| |||| |||||| || || Sbjct 307 ATTTGCATTCCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTG 248 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | || | || || ||||| || ||||| || || | | ||||||| Sbjct 247 TAGTCGCTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGA 188 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| || || || | ||| ||| || || ||| Sbjct 187 TCGGGAGGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAA 128 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| || || | ||| || ||||| ||||| | ||||| || || ||||||||| Sbjct 127 GCCTCGACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 Score = 100 bits (110), Expect = 5e-16 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| || | || || || || Sbjct 535 ATTTGCATTCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTNGANTCNTTNTGGATGTTG 476 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | || | || || ||||| || || || || || | | ||| ||| Sbjct 475 TAGTCGCTGAGNGTNCGGCCGTCNTCCAATTGCTTGCCNGCNAAGATGAGACGCTGCTGA 416 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||| || || |||| || | ||| ||||| || ||| Sbjct 415 TCGGGAGGAATGCCTTCTTTGTCCTGGNTTTTCTGCTTCACATTATCGATAGTGTCTGAA 356 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| || || ||||||||||| || | || || || || ||||||||| Sbjct 355 GCCTCGACTTCGAGGGTAATAGTTTTACCGGTCAAAGTNTTGACGAAGATTTGCATT 299 >seq114236 Length=889 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| || | || || || || Sbjct 583 ATTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTG 642 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || || | || || || || || ||||| || || | | |||||| Sbjct 643 TAGTCGCTTAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGA 702 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| || || | ||||| |||| || || || ||| Sbjct 703 TCTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAA 762 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| ||||||||||| || | || || ||||| |||||||| Sbjct 763 GCCTCGACCTCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 109 bits (120), Expect = 1e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| || | || || || || Sbjct 127 ATTTGCATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTG 186 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | || | || || || || || ||||| || || | | |||||| Sbjct 187 TAGTCGCTNAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGA 246 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| || || | ||||| |||| || || || ||| Sbjct 247 TCTGGAGGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAA 306 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| ||||||||||| || | || || || || |||||||| Sbjct 307 GCCTCGACCTCCANAGTGATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 >seq1613 Length=19885 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || |||| ||||| |||| ||||| ||||| Sbjct 618 ATTTGCATGCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTG 559 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || | ||| || ||||| || || || || || | | || ||| Sbjct 558 TAGTCACTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGA 499 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||||||||| || ||||| || | ||| || || |||||| Sbjct 498 TCAGGAGGAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAA 439 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| ||||| || ||||| || || || || || || || || |||||| Sbjct 438 GCCTCGACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898303355250480