Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1613 123 5e-23 seq114234 114 3e-20 seq114236 86.0 1e-11 >seq1613 Length=19885 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | | || || || ||||||| ||||| |||||| || ||| Sbjct 612 ATGCCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCA 553 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || |||| |||||||| |||||||| ||||| | | || |||||||| Sbjct 552 CTGAGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGA 493 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| | || |||||| || | || || | || Sbjct 492 GGAATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCG 433 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||||||||| || || | || || | || ||||||||| Sbjct 432 ACTTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || | || || || || || ||||| | || || ||| || || || Sbjct 384 ATTCCACCCCTCAATCGCAAGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCG 325 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || |||| |||||||| || ||||| ||||| | | ||||||||| || Sbjct 324 CTGAGGGTGCGGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGACGCTGTTGATCGGGA 265 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| | || |||||| || | || || | || Sbjct 264 GGGATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTATCGATGGTGTCAGAAGCCTCA 205 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||||||||| || | || || | ||| || ||||| Sbjct 204 ACCTCCAGAGTGATGGTTTTACCGGTAAGAGTCTTGACAAAGATTTGCAT 155 >seq114234 Length=910 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | | || || || ||||||| |||||| ||| || || || Sbjct 757 ATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCG 698 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || |||| |||||||| || || |||||||| | | ||||||||| || Sbjct 697 CTGAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGA 638 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || | || |||||| || | || || | || Sbjct 637 GGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCG 578 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||| || || || ||||| | || || |||||| Sbjct 577 ACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 Score = 104 bits (114), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | || || || ||||||| |||||| ||| || || || Sbjct 301 ATTCCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCG 242 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | || |||||||| || || || ||||| | | ||||||||| || Sbjct 241 CTGAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGA 182 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || | || |||||| || | || || | || Sbjct 181 GGAATGCCTTCTTTATCTTGAATCTTCTGCTTGACATTATCAATGGTGTCAGAAGCCTCG 122 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||| || || || ||||| | || || |||||| Sbjct 121 ACCTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 >seq114236 Length=889 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || | | || || || ||||| | || || ||| || || || Sbjct 589 ATTCCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCG 648 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || | || ||||| || ||||| || ||||| | | |||||||| || Sbjct 649 CTTAGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGA 708 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || ||||||||| || | || || | || Sbjct 709 GGAATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCG 768 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || |||||||| || || || || | ||| || ||||| Sbjct 769 ACCTCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982964608702650