Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3604 161 3e-34 seq116056 141 3e-28 >seq3604 Length=7407 Score = 161 bits (178), Expect = 3e-34 Identities = 621/957 (65%), Gaps = 39/957 (4%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG---TATTCTACAATCTCA 155645 || || || ||||||||||| || | ||| ||| | |||| ||||||||||||||| Sbjct 4495 ATCGAAGCGAGATTACATACGGC---CACCTCGTCCTTGCTGGTGTATTCTACAATCTCA 4439 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||| || || || || ||||| ||||| | ||| ||||| || ||||| |||| ||| Sbjct 4438 GTGCAGAGATTCGAGCTTTTGATCGTGCCCAGATTTTTCTGATTTGATTTTTTGTTGCAA 4379 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 || || ||||| || ||||| || || || || || ||||| | || | || | Sbjct 4378 GCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTGCGACTCGATGATGGCGTAC 4319 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATAC 155825 || || | | || || ||| ||| | ||| ||| | ||||| ||| || Sbjct 4318 CACAGTTTTTGCGCTTTGATTGTCTTCCTCGCTCTCCCTGCTTTTTCATACTTCTCGTAA 4259 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTT-ATCGGGGCAAAA 155884 ||| | | || ||||| ||| || || ||| | ||| || ||||||||| Sbjct 4258 AGCTTATCAAATTCATCACCATAAACGTCGACCAAACCA-ATCGCTTCATTGGGGCAAAA 4200 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 ||||||||| | ||| | || || | |||||| | ||| ||| || || Sbjct 4199 TAGCGACCAATCTCCATTGCTTTCAACCCGTTTCATAAACAAATCCGGTATCCACATCGC 4140 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC-TCTAAGA 156003 ||||||||||||| || ||||||| || | |||| ||||| | || ||||| | Sbjct 4139 GTAGAAAAGGTCCCGAGCTCTTGACTCATCTTTGCCGGTGTTCTT-TTTCGCGTCTAAAA 4081 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCT 156060 | || | ||| | ||| || || || |||| ||||| ||| || | | Sbjct 4080 AGTCAAAGACATCCGCATGCCACGGTTCGAGGTACACCGCAAATGCACCTGGCCTTTTAT 4021 Query 156061 TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 | || || || ||||| || || || || || ||| | |||| |||||||| | | || Sbjct 4020 TACCGCCTTGGTCTACGTAACGTGCCGTGTTGTTGTAAACACGCAGCATAGGCAAGAGAC 3961 Query 156121 CATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC--CAGATGAGCGAACATTATGAA 156177 | || || | || || || || ||| |||| ||| | | | ||| || || | Sbjct 3960 CGTTCGAGTTTCCGTTAGTGCCTGCG-ATAT---AACTGCCGCT-AGCTCTAATGTTGGA 3906 Query 156178 TATG--TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 ||| | |||||| || || | ||| || || ||||||| | ||||| || | Sbjct 3905 AATGCTCAATCCAATCCCGCCAGCAGTTTTGGAGATAAGAGCGCACTGCTTTAAGGTTTC 3846 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT---TAATTG 156292 | | || || || || ||||||| ||| | | || | ||| |||| |||||| Sbjct 3845 GTAGATGCCATCGATGCTGTCATCTTGCATCGCCAATAAAAAGC---AACTGGATAATTG 3789 Query 156293 AGGTC--GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350 ||||| ||||| |||||||||||||| || |||| ||||| | || |||| | | Sbjct 3788 AGGTCTATTGGTG--CCAGCGTTGAATAGAGTGGGTGACGCATGGGTGAACCACTTCTCA 3731 Query 156351 GACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAG 156410 |||||| || ||| || || || || | ||| || || || | ||| ||| Sbjct 3730 GACATAAGATTGTAGGTTTCAATAGCGCGATCGATATTTTCGCCATGGATGCCGATGGAG 3671 Query 156411 ACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT---CCATCAATTCGCAGAAGG 156467 || ||||| ||| || || || || || | |||| |||| || | || ||| Sbjct 3670 ACTCTCATTAGCATGTGTTGCGGGCGTTCGGC---CACTTTACCATTAAGTTTCAACAGG 3614 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAA 156524 |||| | || || |||||||| ||||| || | | || ||||| || | |||| Sbjct 3613 TATGACCTCTCTAGCGTTTTAAAGCCGAAGTAGTTATACGAGAAATCCCGATCGTAA 3557 >seq116056 Length=8111 Score = 141 bits (156), Expect = 3e-28 Identities = 619/958 (65%), Gaps = 41/958 (4%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG---TATTCTACAATCTCA 155645 || || || |||||||| || || | ||| ||| | |||| ||||||||||||||| Sbjct 2061 ATCGAAGCGAGATTACACACGGC---CACCTCGTCCTTGCTGGTGTATTCTACAATCTCA 2005 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||| || || || || ||||| ||||| | || || || || ||||| |||| ||| Sbjct 2004 GTGCAGAGATTTGAGCTTTTGATCGTGCCCAGATCTTTTTGATTTGATTTTTTGTTGCAA 1945 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 || || ||||| || ||||| || || || || || ||||| | || | || | Sbjct 1944 GCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTGCGACTCGATGATGGCGTAC 1885 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATAC 155825 || || | | || || ||| ||| | ||| ||| | ||||| ||| || Sbjct 1884 CATAGTTTTTGCGCTTTGATTGTCTTCCTCGCTCTCCCTGCTTTTTCATACTTCTCGTAG 1825 Query 155826 AGCGTTCGGTAATCCTCACCGTA-ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 ||| | | || ||||| || || || | | | || | || ||||||||| Sbjct 1824 AGCTTATCAAACTCATCACCATATACGTCGACCAAACCTATCGC-TTCATTGGGGCAAAA 1766 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 ||||||||| ||| | || || | |||||| | ||| ||| || || Sbjct 1765 TAGCGACCAATCCCCATTGCTTTCAACCCGTTTCATAAACAAATCCGGTATCCACATCGC 1706 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCG-CCGTGATTCTTCCGTAGC-TCTAAG 156002 ||||||||||||| |||| |||| || || | | ||||| ||||| | || ||||| Sbjct 1705 GTAGAAAAGGTCCCGTGCCCTTGATTCATCTTTGCCCGTG-TTCTT-TTTCGCGTCTAAA 1648 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TC 156059 || || | ||| | ||| ||||| || |||| || || ||| || | Sbjct 1647 AAGTCAAAGACATCCGCATGCCACGGCTCGAGGTACACCGCGAATGCACCTGGCCTTTTA 1588 Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || ||||| || || || || ||||| | |||| ||||| || | | | Sbjct 1587 TTACCGCCTTGGTCTACGTAACGTGCTGTGTTATTATAAACACGCAGCATGGGCAAGAGA 1528 Query 156120 CCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC--CAGATGAGCGAACATTATGA 156176 || ||||| | || ||||| || ||| |||| ||| | | | ||| || || Sbjct 1527 CCGTTGGAGTTTCCGTTGGTGCCTGCG-ATAT---AACTGCCGCT-AGCTCTAATGTTGG 1473 Query 156177 ATATG--TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | ||| | |||||| || || | ||| || || ||||||| | ||||| || | Sbjct 1472 AAATGCTCAATCCAATCCCGCCAGCAGTTTTGGAGATAAGAGCGCACTGCTTTAAGGTTT 1413 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT---TAATT 156291 | | || || || || ||||||| ||| | | || | ||| |||| ||||| Sbjct 1412 CGTAGATGCCATCGATGCTGTCATCTTGCATCGCCAATAAAAAGC---AACTGGATAATT 1356 Query 156292 GAGGTC--GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 |||||| ||||| |||||||||||||| || |||| ||||| | || |||| | Sbjct 1355 GAGGTCTATTGGTG--CCAGCGTTGAATAGAGTGGGTGACGCATGGGTGAACCACTTCTC 1298 Query 156350 AGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGA 156409 ||||||| || ||| || || || || | ||| || || || | ||| || Sbjct 1297 AGACATAAGATTGTAGGTTTCAATAGCGCGATCGATATTTTCGCCATGGATGCCGATGGA 1238 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT---CCATCAATTCGCAGAAG 156466 ||| ||||| ||| || || || || || | |||| |||| || | || || Sbjct 1237 GACTCTCATTAGCATGTGTTGCGGGCGTTCGGC---CACTTTACCATTAAGTTTCAACAG 1181 Query 156467 GTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAA 156524 ||||| | || || |||||||| ||||| || | | || ||||| || | |||| Sbjct 1180 GTATGACCTCTCTAGCGTTTTAAAGCCGAAGTAGTTATACGAGAAATCCCGATCGTAA 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469552059224843