Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq114236 114 1e-20 seq1613 109 4e-19 >seq114236 Length=889 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | ||| ||||| || | || || |||||||| ||||| || || Sbjct 364 CCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTN 423 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | ||| ||||| ||| | || | | |||||||| || ||| Sbjct 424 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAGGA 483 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || ||| | || | |||||| ||| || ||| Sbjct 484 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACATTATCGATAGTGTCTGAAGCCTCGACT 543 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||||||||| || || || || || || || |||||| Sbjct 544 TCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 >seq1613 Length=19885 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| | ||| ||||| || | || ||||||||||| || || || || Sbjct 609 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTG 550 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | ||| || ||||| | || | | ||||||||| || ||| Sbjct 549 AGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 490 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | ||| || |||||| | || | ||||| ||| || ||| Sbjct 489 ATCCCTTCTTTATCCTGAATTTTCTGCTTGACATTATCGATGGTGTCGGAAGCCTCGACT 430 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||| || || | || || || || ||||||||| Sbjct 429 TCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || ||||||||||||||||| || || || || || Sbjct 826 ACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTAAGCGTACGGCC 767 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | |||||||| || ||||| || || || Sbjct 766 ATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGAATGCCTTCCTT 707 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||||| | || | ||||| || ||| || ||||| || || Sbjct 706 GTCTTGGATCTTCTGCTTGACGTTATCGATGGTGTCCGAGGCTTCGACCTCAAGCGTGAT 647 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || || || ||||| Sbjct 646 CGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384655164334599