Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq114236 161 2e-34 seq114234 152 1e-31 seq80631 140 6e-28 seq74517 140 6e-28 seq1613 131 3e-25 >seq114236 Length=889 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || || ||||||| ||| ||||| ||||| || || || || | Sbjct 592 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 651 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || || || || ||||| || | ||||||||||||||| Sbjct 652 AGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGA 711 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||||||||| | |||||||||||| || || ||| || || || Sbjct 712 ATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACC 771 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 772 TCCAAAGTGATAGTTTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 818 Score = 150 bits (166), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || || ||||||| ||| ||||| ||||| || || || || Sbjct 136 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTCGATTCCTTCTGGATGTTGTAGTCGCTN 195 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || || || || ||||| || | ||||||||||||||| Sbjct 196 AGGGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGGA 255 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||||||||| | |||||||||||| || || ||| || || || Sbjct 256 ATGCCTTCTTTATCTTGAATCTTCGATTTTACATTTTCGATGGTGTCAGAAGCCTCGACC 315 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || || || ||||| ||||| || || || ||||| Sbjct 316 TCCANAGTGATAGTTTTACCGGTCAAAGTCTTGACNAAGATTTGCAT 362 Score = 145 bits (160), Expect = 1e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | |||||| ||||||| |||||| ||||| || || || || || Sbjct 362 TACCTCCTCTCAATCTCAGAACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGC 421 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | |||||||| | ||| || || |||||||| || | || ||||| |||| Sbjct 422 TNAGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGAG 481 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || || || || ||| || ||||| || || || || || || Sbjct 482 GAATGCCTTCCTTGTCCTGGATTTTCTGC-TTCACATTATCGATAGTGTCTGAAGCCTCG 540 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| | || || || ||||||||||| ||||| || || || |||||| Sbjct 541 ACTTCGAGGGTAATAGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCATT 591 >seq114234 Length=910 Score = 152 bits (168), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || || ||||||| |||||| ||||| || || || || || Sbjct 298 CCACCTCTCANTCTNAGNACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 239 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| | ||| || || || ||||| || | |||||||| ||||| Sbjct 238 AGAGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGA 179 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| |||||||||||||| ||||| ||||| ||||| || ||| || || || Sbjct 178 ATGCCTTCTTTATCTTGAATCTTCTGCTTG-ACATTATCAATGGTGTCAGAAGCCTCGAC 120 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||||||||| || || || || || |||||| Sbjct 119 CTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTGACGAAGATTTGCATT 71 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || || ||||||| |||||| ||||| || || || || || Sbjct 754 CCACCTCTCAGTCTGAGGACCAAGTGCAAAGTAGACTCTTTTTGGATGTTGTAGTCGCTG 695 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| | ||| || || |||||||| || | |||||||| ||||| Sbjct 694 AGAGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGAGGA 635 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| |||||||||||||| ||||| ||||| ||||| || ||| || || || Sbjct 634 ATGCCTTCTTTATCTTGAATCTTCTGCTTG-ACATTATCAATGGTGTCAGAAGCCTCGAC 576 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||||||||| || || || || || |||||| Sbjct 575 CTCCAAAGTAATGGTTTTGCCTGTCAAAGTTTTCACGAAGATTTGCATT 527 >seq80631 Length=8887 Score = 140 bits (154), Expect = 6e-28 Identities = 185/254 (73%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 198375 GGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGA 198434 || ||||||||| |||| | || ||||||||||| || || ||||| || ||| | | Sbjct 3735 GGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCTGAA 3676 Query 198435 ACACCGGAAGACGCT-TTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGG 198493 |||||||| | ||| | ||| | | ||| | || ||| ||||||| ||||| ||||| Sbjct 3675 TCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGACGG 3617 Query 198494 CACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGC 198553 | ||||| ||||| || || || || |||||||| || || || | ||||||| || Sbjct 3616 CCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCAAGG 3557 Query 198554 GTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAA 198613 ||||| ||| ||| | || || ||||| | | |||||||| |||||| | | | Sbjct 3556 GTGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGTCAAAG 3497 Query 198614 AAAATTTGATGTTG 198627 ||||||||| |||| Sbjct 3496 AAAATTTGACGTTG 3483 >seq74517 Length=5657 Score = 140 bits (154), Expect = 6e-28 Identities = 185/254 (73%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 198375 GGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGA 198434 || ||||||||| |||| | || ||||||||||| || || ||||| || ||| | | Sbjct 4412 GGCAAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCTGAA 4353 Query 198435 ACACCGGAAGACGCT-TTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGG 198493 |||||||| | ||| | ||| | | ||| | || ||| ||||||| ||||| ||||| Sbjct 4352 TCACCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGACGG 4294 Query 198494 CACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGC 198553 | ||||| ||||| || || || || |||||||| || || || | ||||||| || Sbjct 4293 CCGTGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCAAGG 4234 Query 198554 GTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAA 198613 ||||| ||| ||| | || || ||||| | | |||||||| |||||| | | | Sbjct 4233 GTGGAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGTCAAAG 4174 Query 198614 AAAATTTGATGTTG 198627 ||||||||| |||| Sbjct 4173 AAAATTTGACGTTG 4160 >seq1613 Length=19885 Score = 131 bits (144), Expect = 3e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | ||| || ||||||| |||||||||||| || ||||| || ||| Sbjct 609 CCACCTCTCAGTCTCAGGACCAAGTGCAAAGTAGATTCTTTTTGGATATTGTAGTCACTG 550 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | ||| || ||||| ||||| || | ||| ||||| ||||| Sbjct 549 AGGGTACGGCCATCCTCCAATTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 490 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| ||||| || ||| || ||||| || || || || || || || Sbjct 489 ATCCCTTCTTTATCCTGAATTTTCTGC-TTGACATTATCGATGGTGTCGGAAGCCTCGAC 431 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | ||| || || || || |||| ||||| || || ||||||||| Sbjct 430 TTCAAGAGTAATGGTTTTTCCGGTCAGAGTCTTCACGAAAATCTGCATT 382 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||| || || | || |||||||||||||| || || || || || Sbjct 837 CCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTA 778 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || |||||||| | || ||||||||||| Sbjct 777 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGA 718 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| ||| || || || || || || || | ||| || Sbjct 717 ATGCCTTCCTTGTCTTGGATCTTCTGC-TTGACGTTATCGATGGTGTCCGAGGCTTCGAC 659 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| ||||| | || ||||| || || ||||| Sbjct 658 CTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCAT 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980315892107121