Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq80631 118 2e-21 seq74517 118 2e-21 >seq80631 Length=8887 Score = 118 bits (130), Expect = 2e-21 Identities = 215/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 183001 AAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGA 183060 |||||| |||| || |||| || ||||| || | || | |||||| || || Sbjct 3791 AAGGCA-AAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGGTGCACACCGGC 3733 Query 183061 AAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACT 183120 ||||||||| |||| | | ||||||||||| || || ||||| || ||| | | | Sbjct 3732 AAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCTGAATCA 3673 Query 183121 CCGGAAGATGCT-TTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTAC 183179 |||||| | ||| | ||| | | ||| | ||||| ||||||| ||||| ||||| Sbjct 3672 CCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGACGGCCG 3614 Query 183180 GGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTG 183239 ||||| ||||| || || || || |||||||| || || || | || ||| || ||| Sbjct 3613 TGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCAAGGGTG 3554 Query 183240 GAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAA 183299 || ||| ||| | || || ||||| | | |||||||| || ||| | | | || Sbjct 3553 GAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGTCAAAGAAA 3494 Query 183300 ATTTGATGTTG 183310 |||||| |||| Sbjct 3493 ATTTGACGTTG 3483 >seq74517 Length=5657 Score = 118 bits (130), Expect = 2e-21 Identities = 215/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 183001 AAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGA 183060 |||||| |||| || |||| || ||||| || | || | |||||| || || Sbjct 4468 AAGGCA-AAACCCACGACCGGCTGTGGAACGCCGCCCAGTTGCAGATGGTGCACACCGGC 4410 Query 183061 AAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACT 183120 ||||||||| |||| | | ||||||||||| || || ||||| || ||| | | | Sbjct 4409 AAAATGCATGGTTTCATGAGGATGTACTGGGCGAAGAAAATACTCGAGTGGTCTGAATCA 4350 Query 183121 CCGGAAGATGCT-TTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTAC 183179 |||||| | ||| | ||| | | ||| | ||||| ||||||| ||||| ||||| Sbjct 4349 CCGGAAAAGGCTCTCGAGAT-TGCAATCAAGCTGAACGATAAGTATGAACTTGACGGCCG 4291 Query 183180 GGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTG 183239 ||||| ||||| || || || || |||||||| || || || | || ||| || ||| Sbjct 4290 TGATCCAAACGGGTATGTTGGATGCATGTGGTCGATCTGTGGCATTCATGATCAAGGGTG 4231 Query 183240 GAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAA 183299 || ||| ||| | || || ||||| | | |||||||| || ||| | | | || Sbjct 4230 GAGAGAGAGAGAGGTTTTCGGTAAGATTCGCTTCATGAATTACAAGGGTTGTCAAAGAAA 4171 Query 183300 ATTTGATGTTG 183310 |||||| |||| Sbjct 4170 ATTTGACGTTG 4160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902054513523040