Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8437 286 3e-72 seq107075 84.2 2e-11 seq34864 84.2 2e-11 seq25502 84.2 2e-11 >seq8437 Length=12918 Score = 286 bits (316), Expect = 3e-72 Identities = 472/666 (71%), Gaps = 14/666 (2%) Strand=Plus/Minus Query 40656 TTTGGATGTCAAAATA-GATACAATTTGAGA-AATCAGTTTCCGTTGCTAACTACaaaaa 40713 ||||| || | |||| ||| |||| | || ||||| ||||| ||||| || ||||| Sbjct 6314 TTTGG-TGCCCAAATGCGATTCAATATCAGGGAATCA-TTTCCTTTGCTCACGACAAAGC 6257 Query 40714 aaaTGTTTTGGAAAGGC--ATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAA 40771 ||||||||| |||| |||| || |||||||| ||||| || || || ||||||| Sbjct 6256 GCGTGTTTTGGAGAGGCGTATTGGAG--GAACTGTTGTGGTTCATAAAGGGGAGTACTAA 6199 Query 40772 TGCTAAGAAATTATCAGA-AAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACAT 40830 || ||| || | || || |||| ||| ||||||||| |||| || | |||||| || Sbjct 6198 CGCAAAGGAACTCTCGGATAAGAA-AGTACACATTTGGGATGCAAACGGCTCTAAAGAAT 6140 Query 40831 ATTTGTCTA-GCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGA 40889 | || || | | || || || ||| | || || || || |||||||| ||||||||| Sbjct 6139 TTCTGAGTAAGTCTGGGTTTTCA-GATCGCGAAGAGGGCGACCTTGGTCCGGTTTATGGA 6081 Query 40890 TTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAA 40949 ||||| | ||| ||||||||||| |||| | ||| | | ||||| || ||| Sbjct 6080 TTTCAATGGCGCCATTTTGGAGCTGAATACCAAGACATGCATGCCGATTACACTGGAAAA 6021 Query 40950 GGAATGGATCAA-TTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACG 41008 || | || || || | | ||||| | ||||| ||||| |||| ||||| | || Sbjct 6020 GGTGTTGACCAGCTTGCCGAT-GTTATCAACACGATACAATCCAATCCGAATAGCAGGCG 5962 Query 41009 TATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCA 41068 || ||| ||||||| ||||| | | ||| | | | |||||||| || || ||||| Sbjct 5961 GATTATAATGTGCGCATGGAATGCCAAGGATATCCCTCAAATGGCATTACCCCCGTGTCA 5902 Query 41069 TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 | |||| || ||||| |||| |||| || ||||| ||||| | |||||| |||| Sbjct 5901 TGCTCTATGCCAATTTTATGTTTCTGATGGAGAGCTGTCTTGTCAGCTTTATCAACGATC 5842 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 | |||||||| |||| ||||||| || || || || ||| | | ||||||||||| Sbjct 5841 TGCAGACATGGGCTTAGGCATCCCGTTCAATATCGCCAGCTATTCCTTACTCACGTATAT 5782 Query 41189 GATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACA 41248 |||||| || ||||| ||||| ||||| ||||| || || || || | || |||| || Sbjct 5781 GATTGCTCATGTTACGAATTTGAAACCCGGTGACTTCGTACATACTATTGGTGATGCTCA 5722 Query 41249 TATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATT 41308 | |||||| |||||| | || | | ||||||||||| || | || ||||| || Sbjct 5721 TGTTTACACGAATCACGTTGAAGCAATCGAAGAACAACTGAAGCGTGAGCCAAGACCGTT 5662 Query 41309 TCCAAC 41314 || || Sbjct 5661 CCCGAC 5656 >seq107075 Length=9498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG------ 19603 ||||||| || || | || ||| | ||||| || || ||||||||||| || | Sbjct 6692 TGCACATCATCATCTTTGACGAAATCGACGCCATTTGCAAGCAAAGAGGCTCCGTAGCCG 6751 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 ||| || || ||||||||||| ||||||||||||||||| ||| | ||||| || Sbjct 6752 GTGCTTCCGGCGTCCATGACACTGTGGTCAATCAACTCCTGTCCAAAATCGACGGAGTGG 6811 Query 19664 ACCAACTGAATAATATTTTAGTTATTGG 19691 | || || || || ||| | ||||| || Sbjct 6812 ATCAGCTCAACAACATTCTCGTTATCGG 6839 >seq34864 Length=6837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG------ 19603 ||||||| || || | || ||| | ||||| || || ||||||||||| || | Sbjct 1012 TGCACATCATCATCTTTGACGAAATCGACGCCATTTGCAAGCAAAGAGGCTCCGTAGCCG 1071 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 ||| || || ||||||||||| ||||||||||||||||| ||| | ||||| || Sbjct 1072 GTGCTTCCGGCGTCCATGACACTGTGGTCAATCAACTCCTGTCCAAAATCGACGGAGTGG 1131 Query 19664 ACCAACTGAATAATATTTTAGTTATTGG 19691 | || || || || ||| | ||||| || Sbjct 1132 ATCAGCTCAACAACATTCTCGTTATCGG 1159 >seq25502 Length=15274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 ||||||||| || ||| || ||| | ||||| ||||||||||| || || | |||| Sbjct 5240 GTCGCGTTTTCATGTGTTGAGGGCGTGTTCTTCAGCGGATCGTTTGCCGCTATTTATTGG 5181 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 || ||||| || || |||||||| || ||||||||||||| || Sbjct 5180 TTGAAGAAGCGTGGGTTGATGCCGGGTCTGACGTTTTCAAACGA 5137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396874047284695