Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3604 170 2e-37 seq116056 149 8e-31 seq25502 82.4 1e-10 >seq3604 Length=7407 Score = 170 bits (188), Expect = 2e-37 Identities = 705/1096 (64%), Gaps = 21/1096 (2%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||||||||| | | | ||| | ||| | ||| ||||| ||||||||||||||||||| Sbjct 5400 TGAACTGAATGGCTTGAGCTGCTGGCTTCGTTCGAAGATAATACATCCCGGTCTTGAGTC 5341 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCC-ATG 110449 | ||||| |||| | |||||| || |||||| | | ||| | || | ||| Sbjct 5340 CGACCTTCCACCCGTAAAAATGCATGCTAGTCAGCTTGC-CGTAGTTAGGCTCCGCGATG 5282 Query 110450 AAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATG 110509 | ||||| ||||||||||||||| ||| | | |||| | || ||||| | ||| Sbjct 5281 TGAATGTTCAAACTTTGACTTTGGTCGATGTACGGTGCCCGGTCGGCTGCCATTTTGATG 5222 Query 110510 ACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATA 110569 | | |||| | ||| ||||| || || ||||| | | ||| ||||| || || || Sbjct 5221 ATGTTCTTCTGCGAAATCTCCCACACGGTACGATACAATTCCTTCATATCCTCAGGAATC 5162 Query 110570 TCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGAT---CCTTCATATCCTTG 110626 | | ||| ||||| || || || || | || || | ||| | || | | Sbjct 5161 TGAGGGATGTTCTGAATCGA---TCCGTTGTTTGCGATAAGCTGCAACTTTACGTCATCG 5105 Query 110627 GACCAGAGACCAATCTTCT-TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTC 110685 ||||| ||| | |||| | | || ||| || |||| || ||||| || || Sbjct 5104 TTCCAGATACCTCT-TTCTGTCAAATCCATGAGTAGATGCTGATTTACAATCTGGAATTC 5046 Query 110686 ACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATT 110745 || | || | | | ||| ||||| | |||||||| |||| | ||||||||| Sbjct 5045 GCCGGACAGCACACGACGCGTGTAAATGTTGCTGGTGTATGGCTCAATGGCTTCATTATT 4986 Query 110746 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 110805 ||||| ||||| || ||||| ||||||||||| || || | || ||| ||||| | Sbjct 4985 ACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTACGTAC 4926 Query 110806 ACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCA 110863 || | || ||||| || || | | |||| | | | | || | || ||| Sbjct 4925 TCCGTGCTTTTTGATCTTCTCTTTCAAAGACGCCCAATCCCACAAATCAG-TGGGGGTCA 4867 Query 110864 CCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCA 110923 | |||||| ||| |||| | |||||| | ||||| |||||| || | ||| Sbjct 4866 -CGCCCCACAAATCATACTGTAATTGACCTTGGCTGACAGGAGATCCCTCATAGCTCTCA 4808 Query 110924 TAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 110983 || | ||| |||| || | ||| || ||| || | ||| ||| ||||| Sbjct 4807 TACGGACCGCTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGAAATAAATGGTC 4748 Query 110984 TCAAAGATACGAGCATTCATCTCCTTGGCTTC--ATCTGAATCAAATGCGTAGCGGCACA 111041 || || || | | || | || | |||| || ||| ||||| | || ||| Sbjct 4747 TCGAATATTTCAACGTTGAGCTTCATGGCCTCGGGGCTG--TCAAACGGCATTCGCAACA 4690 Query 111042 AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG 111101 ||||| | |||||||| ||||| || || | ||| || || | ||| | ||| || | Sbjct 4689 TGATAAAGGCGTCCGCGAGCCCTTGCACTCCAATACCGATTGGACGGTGCCTCATGTTCG 4630 Query 111102 ACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 111161 | || | ||| || || || | || ||||||||| | ||| ||||| | Sbjct 4629 AATTCCTCGCTTGAGGTACAGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATTCCGTG 4570 Query 111162 TAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGA 111221 | || | ||| | || | | ||||| ||||| | | | ||| || || | Sbjct 4569 TGACTACCTTGCACACGTCGTACAATTTTTTGAAATCATACTTTC-CGTC-GTTGGTT-A 4513 Query 111222 CATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGT 111281 |||| || | ||||| || || | ||| || || ||| ||| ||||| |||| Sbjct 4512 CATAACGGGGCAATGCGATCGAAGCGAGATTACATACGGCCACCTCGTCCTTGCTGGTGT 4453 Query 111282 ACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTAC 111341 | |||| ||| || || || | || || || || ||||| |||| ||| || || || Sbjct 4452 ATTCTACAATCTCAGTGCAGAGATTCGAGCTTTTGATCGTGCCCAGATTTTTCTGATTTG 4393 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 || |||||||| || || |||||||||||||| ||||| || || || |||| || | Sbjct 4392 ATTTTTTGTTGCAAGCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTGCGACT 4333 Query 111402 TGAGAATAGCCTTCCA 111417 || || || | ||| Sbjct 4332 CGATGATGGCGTACCA 4317 >seq116056 Length=8111 Score = 149 bits (164), Expect = 8e-31 Identities = 701/1099 (64%), Gaps = 27/1099 (2%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || | | | || || ||| | ||| ||||| |||||||| |||||||||| Sbjct 2966 TGAACTGGATGGCTTGAGCCGCCGGCTTCGTTCGAAGATAATACATCCCCGTCTTGAGTC 2907 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCC-ATG 110449 | ||||| |||| | |||||| | | |||| | | ||| | || | ||| Sbjct 2906 CGACCTTCCACCCGTAAAAATGCATGCTGGTCAACTTGC-CGTAGTTAGGCTCGGCGATG 2848 Query 110450 AAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATG 110509 | ||||| ||||||||||||||| ||| | | |||| | || ||||| | ||| Sbjct 2847 TGAATGTTCAAACTTTGACTTTGGTCGATGTACGGTGCCCGGTCGGCAGCCATTTTGATG 2788 Query 110510 ACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATA 110569 | | |||| | ||| ||||| || || ||||| | ||||| ||||| || || || Sbjct 2787 ATGTTCTTCTGCGAAATCTCCCACACGGTACGATACAATTTCTTCATATCCTCAGGAATC 2728 Query 110570 TCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGAT---CCTTCATATCCTTG 110626 | | ||| || || || ||| || || | ||||| | ||| | ||| | | Sbjct 2727 TGAGGGATGTTTTGAATCGAA---CCGTTGTTAGCGATGAGCTGCAACTTTACATCATCG 2671 Query 110627 GACCAGAGACCAATCTTCT-TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTC 110685 ||||| ||| | |||| | | || ||| | ||| || ||||| || || Sbjct 2670 TTCCAGATACCTCT-TTCTGTCAAATCCATGAGTAAACGCTGATTTACAATCTGGAATTC 2612 Query 110686 ACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATT 110745 || | || | || | ||| ||||| | |||||||| |||| | ||||||||| Sbjct 2611 GCCGGACAGCACACGTCGCGTGTAAATGTTGCTAGTGTATGGCTCAATGGCTTCATTATT 2552 Query 110746 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 110805 ||||| ||||| || ||||| ||||||||||| || || | || ||| || || | Sbjct 2551 ACCCAGTATTTGAGCAGTGGATGCTGTTGGCATCGGCGCTAACAGCAGAGAATTGCGTAC 2492 Query 110806 ACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCA 110863 || | || ||||| || || | | |||| | | | | || | || ||| Sbjct 2491 TCCGTGCTTTTTGATCTTCTCTTTCAAAGACGCCCAATCCCACAAATCAG-TGGGGGTCA 2433 Query 110864 CCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCA 110923 | |||||| ||| |||| | |||||| ||||| |||||| || | ||| Sbjct 2432 -CGCCCCACAAATCATACTGTAATTGACCTTGGCTGATAGGAGATCCCTCATAGCTCTCA 2374 Query 110924 TAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 110983 || | ||| |||| || | ||| || ||| || | ||| ||| ||||| Sbjct 2373 TACGGACCGCTCTCTTCCGCAAGTTCGCAAGACGCTGTCAAAGCCGCGAAATAAATGGTC 2314 Query 110984 TCAAAGATACGAGCATTCATCTCCTTGGCTTC--ATCTGAATCAAATGCGTAGCGGCACA 111041 || || || | | || | || | |||| || ||| || |||| || ||| Sbjct 2313 TCGAATATTTCAACGTTGAGCTTCATGGCCTCGGGGCTG--TCGAATGGCATTCGCAACA 2256 Query 111042 AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG 111101 ||||| | ||||| || ||||| || || | ||| || || | ||| | ||| || | Sbjct 2255 TGATAAAGGCGTCCGCCAGTCCTTGCACTCCAATACCGATCGGACGGTGCCTCATGTTCG 2196 Query 111102 ACTTTCGCGC---AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 | || | ||| || | ||||| || | || ||||||||| | ||| ||||| Sbjct 2195 AATTCCTCGCTTGAGGC---ACGGGGTAGTAGTTGATGTCAATGATTTTGTTCAGATTCC 2139 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 111218 || || | ||| | || | | ||||| ||||| | | | | || | Sbjct 2138 GTGTGACGACCTTGCACACGTCGTACAATTTTTTGAAATCATACTTTCCA---TCGTTGG 2082 Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 | || || || | ||||| || || | ||| || || ||| ||| ||||| | Sbjct 2081 TTACGTATCGGGGCAATGCGATCGAAGCGAGATTACACACGGCCACCTCGTCCTTGCTGG 2022 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 |||| |||| ||| || || || | || || || || ||||| |||| || ||||| | Sbjct 2021 TGTATTCTACAATCTCAGTGCAGAGATTTGAGCTTTTGATCGTGCCCAGATCTTTTTGAT 1962 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 | || |||||||| || || |||||||||||||| ||||| || || || |||| | Sbjct 1961 TTGATTTTTTGTTGCAAGCGTCTTTGTAGAGCATGTACGGCGTACCGGTTTCGATCTGCG 1902 Query 111399 ATTTGAGAATAGCCTTCCA 111417 | | || || || | ||| Sbjct 1901 ACTCGATGATGGCGTACCA 1883 >seq25502 Length=15274 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 122691 AATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAAT 122750 || |||||| ||||| || ||||| ||||| | || |||||||||||||||||||| Sbjct 5130 AACAAGTTCGTTTGAAAACGTCAGACCCGGCATCAACCCACGCTTCTTCAACCAATAAAT 5189 Query 122751 AGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 |||| || || ||| |||||| | ||||| ||||| | |||||| Sbjct 5190 AGCGGCAAACGATCCGCTGAAGAACACGCCCTCAACACATGAAAACGC 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627088860794400