Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq8437 118 8e-22 >seq8437 Length=12918 Score = 118 bits (130), Expect = 8e-22 Identities = 265/393 (67%), Gaps = 9/393 (2%) Strand=Plus/Plus Query 111730 TAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGT 111789 |||||||| ||||| || ||| ||| | || || | || | |||| || | || Sbjct 5716 TAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTCAAATTCGTAACATGA 5775 Query 111790 GCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATA 111849 |||||||| || ||||||| || || || || || || || | |||| |||||| Sbjct 5776 GCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGGATGCCTAAGCCCATG 5835 Query 111850 TCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAA 111909 ||| | |||| |||||| |||||||| || || | | || ||||||||||| || Sbjct 5836 TCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAAACATAAAATTGGCAT 5895 Query 111910 AGTACATGACAAGGAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATG 111966 || ||||||| || || |||||||| | ||| || |||||| ||||| Sbjct 5896 AGAGCATGACACGGGGGTAATGCCATTTGAGGGATATCCTTGGCATTCCATGCGCACATT 5955 Query 111967 ATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGT--ATGACATTCAAGAGCTGGT 112024 || |||| ||||| | |||| || | |||||| || |||| ||||||| Sbjct 5956 ATAATCCGCCTGCTATTCGGATTGGATT--GTATCGTGTTGATAACATCGGCAAGCTGGT 6013 Query 112025 CTATCCCTTTACCAGTATAATCCGCCTGACAT-CCAGTGTATGTTGCCCCATAGTGTCTC 112083 | | ||||| ||||| ||||| || || ||| | |||| || ||| | || | | Sbjct 6014 CAACACCTTTTCCAGTGTAATCGGCATG-CATGTCTTGGTATTCAGCTCCAAAATGGCGC 6072 Query 112084 CATTGGAATCCATAAATAGGCCCCAGATCTCCC 112116 ||||| |||||||||| || || || || ||| Sbjct 6073 CATTGAAATCCATAAACCGGACCAAGGTCGCCC 6105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391371715579657