Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq116056 95.1 1e-14 seq3604 89.7 6e-13 >seq116056 Length=8111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 55713 AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC 55772 |||||||| | | | ||| | | || || || |||||||||||| | ||||||| Sbjct 2727 AGATTCCTGAGGATATGAAGAAATTGTATCGTACCGTGTGGGAGATTTCGCAGAAGAACA 2786 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAACAT 55830 | || | ||| ||| || || | ||||||||||||| ||| ||| | |||||| Sbjct 2787 TCATCAAAATGGCTGCCGACCGGGCACCGTACATCGACCAAAGTCAAAGTTT--GAACAT 2844 Query 55831 CTTCATGGAGAATCCTTCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 ||| | | ||| ||| | |||||||| | ||||| ||||||||||||||| Sbjct 2845 TCACATCGCCGAGCCTA-ACTACGGCAAGTTGACCAGCATGCATTTTTACGGGTGGAAGG 2903 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||||||||| ||||| ||||| || || Sbjct 2904 TCGGACTCAAGACGGGGATGTATTATCTTCGAAC 2937 >seq3604 Length=7407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 55713 AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC 55772 |||||||| | | | ||||| | || || || |||||||||||| | ||||||| Sbjct 5161 AGATTCCTGAGGATATGAAGGAATTGTATCGTACCGTGTGGGAGATTTCGCAGAAGAACA 5220 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAACAT 55830 | || | ||| || || || | ||||||||||||| ||| ||| | |||||| Sbjct 5221 TCATCAAAATGGCAGCCGACCGGGCACCGTACATCGACCAAAGTCAAAGTTT--GAACAT 5278 Query 55831 CTTCATGGAGAATCCTTCACTG-GCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAG 55888 ||| | | | ||| ||| | |||| ||| || | ||||| ||||||||||||||| Sbjct 5279 TCACATCGCGGAGCCTA-ACTACGGCAAGCTGA-CTAGCATGCATTTTTACGGGTGGAAG 5336 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||| || ||||| ||||| || || Sbjct 5337 GTCGGACTCAAGACCGGGATGTATTATCTTCGAAC 5371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546394225212200