Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8437 203 3e-47 >seq8437 Length=12918 Score = 203 bits (224), Expect = 3e-47 Identities = 441/650 (68%), Gaps = 20/650 (3%) Strand=Plus/Plus Query 29820 TCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC-AGC 29878 |||| |||| |||| ||| || || ||||| ||||| | || || || ||||| | Sbjct 5639 TCCTCGTTATGCTCAATGTCGGGAACGGTCTTGGCTCACGCTTCAGTTGT-TCTTCGATT 5697 Query 29879 GGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGT 29938 | ||| |||| || | ||| || ||||| || || | | || || || || || ||| Sbjct 5698 GCTTCAACGTGATTCGTGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGT 5757 Query 29939 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29998 | | || || ||||| ||||| |||||||| | || ||||||||||| || || Sbjct 5758 TTCAAATTCGTAACATGAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAAC 5817 Query 29999 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG 30058 || | || | |||||||| | || | || || |||||||| || |||||||| || Sbjct 5818 GGGATGCCTAAGCCCATGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCA 5877 Query 30059 CTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTT 30116 || ||||| || || | || || ||||| || | |||| ||||| | || | Sbjct 5878 GAAACATAAAATTGGCATAGAGCATGACACGGGGGTAATGCCATTTGAGG--GATATCCT 5935 Query 30117 TGGGGTTCCAGGCGCACACGATGATGCGCCTG-TCTTC----TGGGTTGT-TCCTGATGA 30170 ||| ||||| ||||||| || || |||||| | ||| ||| |||| || || ||| Sbjct 5936 TGGCATTCCATGCGCACATTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGA 5995 Query 30171 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30230 | |||| ||||| || || || | || | ||| || || |||||| Sbjct 5996 TAACATCGGC------AAGCTGGTCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTT 6049 Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 ||| || ||||| ||||| | ||| || || || || ||||| || ||||| ||||||| Sbjct 6050 GGTATTCAGCTCCAAAATGGCGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTT 6109 Query 30291 CCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 | | | || || ||| ||| || ||| ||| | || ||||| || ||||| || Sbjct 6110 CGC-GATCTGAAAACCCAGACTTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATG 6168 Query 30350 TTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30409 | ||| ||| || ||||| || || | ||| || ||| | | |||||||| ||| Sbjct 6169 TGTACTTTCTTATCCGAGAGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAGT 6228 Query 30410 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 ||||||| ||| | ||||||| || | ||| |||||||| | ||||| Sbjct 6229 TCCTCCAATACGCCTCTCCAAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405715482724788