Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1613 86.0 4e-12 >seq1613 Length=19885 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||||| | || | ||| ||||| || ||||||||||| || || | Sbjct 837 CCGCCTCGGAGACGAAGTACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGCTA 778 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || ||||| || |||| |||||| || || || || Sbjct 777 AGCGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGATCTGGAGGA 718 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| || || ||| || || ||||| | || || Sbjct 717 ATGCCTTCCTTGTCTTGGATCTTCTG-CTTGACGTTATCGATGGTGTCCGAGGCTTCGAC 659 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | ||||| || || || |||||| Sbjct 658 CTCAAGCGTGATCGTCTTTCCTGTGAGGGTTTTTACGAAGATTTGCATG 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314268774788387