Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8437 219 4e-52 >seq8437 Length=12918 Score = 219 bits (242), Expect = 4e-52 Identities = 395/575 (69%), Gaps = 2/575 (0%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||| ||| ||| | ||| ||||| || | ||||| || | || || || ||| Sbjct 5706 GTGATTCGTGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTCAAATT 5765 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | |||||||| ||||| |||||||| | | || || || || |||||||| | || Sbjct 5766 CGTAACATGAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGGATGCC 5825 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 ||| ||||||||| | ||||||||||| ||||| || |||||||| |||| | || || Sbjct 5826 TAAGCCCATGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAAACATA 5885 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 |||||||| || | || |||||||| | ||||| |||||| |||||| | ||||| Sbjct 5886 AAATTGGCATAGAGCATGACACGGGGGTAATGCCATTTGAGGGATATCCTTGGCATTCCA 5945 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852 |||||||| | |||| ||| || || || | | |||| ||| || | | | Sbjct 5946 TGCGCACATTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGATAACAT-CGG 6004 Query 6853 C-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 | |||||||| | || | ||| | || || || | | | | || || || |||| Sbjct 6005 CAAGCTGGTCAACACCTTTTCCAGTGTAATCGGCATGCATGTCTTGGTATTCAGCTCCAA 6064 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 | || | ||| || || || || ||||| || | ||||||||| || ||| || |||| Sbjct 6065 AATGGCGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTTCGCGATCTGAAAACC 6124 Query 6972 CCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACG 7031 | ||| |||||| ||| ||| |||| || ||||| || | || | || Sbjct 6125 CAGACTTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATGTGTACTTTCTTATCCG 6184 Query 7032 AGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCT 7091 |||| ||||| | ||| || |||| | | |||||||| ||| ||||| | ||||| Sbjct 6185 AGAGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAGTTCCTCCAATACGCCTC 6244 Query 7092 TCCAGTACACACGTTTCGTCGTCAGCAGCGGAAAT 7126 |||| |||| || || ||||| |||| |||||| Sbjct 6245 TCCAAAACACGCGCTTTGTCGTGAGCAAAGGAAAT 6279 Score = 219 bits (242), Expect = 4e-52 Identities = 395/575 (69%), Gaps = 2/575 (0%) Strand=Plus/Minus Query 34219 ATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTG 34278 |||||| |||| ||||| || || |||| |||| ||||| | ||||| ||| |||| Sbjct 6279 ATTTCCTTTGCTCACGACAAAGCGCGTGTTTTGGAGAGGCGTATTGGAGGAACTGTTGTG 6220 Query 34279 GTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGA 34338 |||| | | |||| || ||| | ||||| |||||| | || | || ||||| Sbjct 6219 GTTCATAAAGGGGAGTACTAACGCAAAGGAACTCTCGGATAAGAAAGTACACATTTGGGA 6160 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA 34398 || |||| ||| ||| |||||| ||| ||||| || ||| || |||||||| Sbjct 6159 TGCAAACGGCTCTAAAGAATTTCTGAGTAAGTCTGGGTTTTCAGATCGCGAAGAGGGCGA 6100 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | | || ||||| || || || || ||| | || ||||| || || || | | | | Sbjct 6099 CCTTGGTCCGGTTTATGGATTTCAATGGCGCCATTTTGGAGCTGAATACCAAGACATGCA 6040 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGC 34517 || || || | ||| | || | |||||||| || | | || ||| |||| | | Sbjct 6039 TGCCGATTACACTGGAAAAGGTGTTGACCAGCTTGCCG-ATGTTATCAACACGATACAAT 5981 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 || || || ||| |||| | |||||||| ||||| | |||||| |||||| | Sbjct 5980 CCAATCCGAATAGCAGGCGGATTATAATGTGCGCATGGAATGCCAAGGATATCCCTCAAA 5921 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 |||| | |||||||| || | || |||||||| || || | |||| |||||||| | Sbjct 5920 TGGCATTACCCCCGTGTCATGCTCTATGCCAATTTTATGTTTCTGATGGAGAGCTGTCTT 5861 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 | ||||| ||||||||||| | ||||||||| ||||| | |||||||| || || || | Sbjct 5860 GTCAGCTTTATCAACGATCTGCAGACATGGGCTTAGGCATCCCGTTCAATATCGCCAGCT 5801 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757 | | | |||||||| ||||| |||||||| | ||| || || || | || | Sbjct 5800 ATTCCTTACTCACGTATATGATTGCTCATGTTACGAATTTGAAACCCGGTGACTTCGTAC 5741 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 |||| | || ||||| ||| | ||| ||| ||| Sbjct 5740 ATACTATTGGTGATGCTCATGTTTACACGAATCAC 5706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447589227544080