Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8437 138 9e-28 >seq8437 Length=12918 Score = 138 bits (152), Expect = 9e-28 Identities = 390/591 (66%), Gaps = 26/591 (4%) Strand=Plus/Plus Query 118474 TCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTA 118533 |||| ||||||| | || ||||||||||| ||||| ||||||| ||| ||||| ||| | Sbjct 5701 TCAACGTGATTCGTGTAAACATGAGCATCACCAATAGTATGTACGAAGTCACCGGGTTTC 5760 Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 | || | ||||||||||| || || | || |||||||| | ||| || || Sbjct 5761 AAATTCGTAACATGAGCAATCATATACGTGAGTAAGGAATAGCTGGCGATATTGAACGGG 5820 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 | || | ||||||||||| |||| || || | || ||||| ||||| || | | | Sbjct 5821 ATGCCTAAGCCCATGTCTGCAGATCGTTGATAAAGCTGACAAGACAGCTCTCCATCAGAA 5880 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT-----GGAACTCAGTTGGG 118708 |||||||| || | || ||||| || || | |||| ||| || ||| Sbjct 5881 ACATAAAATTGGCATAGAGCATGACACGGGGGTAATGCCATTTGAGGGATATC-CTTG-- 5937 Query 118709 CAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAA 118768 | |||||| || | | | || ||||||| || | ||||| | | Sbjct 5938 --GCATTCCATGCGCACATTATAATCCGCCTGCTATTCGGATTGGATTGTATCGTGTTGA 5995 Query 118769 TTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCAT-CCTTTATAT 118827 | | || || ||| || ||||| |||||||| || | | | |||| ||| ||| Sbjct 5996 TAACATCGGCAAGCTGGTCAACACCTTTTCCAGTGTAAT-CGGCATGCATGTCTTGGTAT 6054 Query 118828 TCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCT----GGGA 118883 || || |||||| | ||||||||| |||||||| || || || || |||| | || Sbjct 6055 TCAGCTCCAAAATGGCGCCATTGAAATCCATAAACCGGACCAAGGTCGCCCTCTTCGCGA 6114 Query 118884 CCT-AAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAG 118942 || |||| | | || || ||| |||||||||| || || || |||| |||||| Sbjct 6115 TCTGAAAACCCAGAC-----TTACTCAGAAATTCTTTAGAGCCGTTTGCATCCCAAATGT 6169 Query 118943 CAACTCCtttttttGCCAGA--TCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAG 119000 ||| || || | | ||| || || | ||| ||| || ||| ||||| | || Sbjct 6170 GTACT--TTCTTATCCGAGAGTTCCTTTGCGTTAGTACTCCCCTTTATGAACCACAACAG 6227 Query 119001 CTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 ||||| | |||||||||||||| || ||||| || | || ||||| Sbjct 6228 TTCCTCCAATACGCCTCTCCAAAACACGCGCTTTGTCGTGAGCAAAGGAAA 6278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413869925530396