Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryllus_20schlosseri_20[genbank_20GCA_5F000444245.1_202013-08-07] 120,139 sequences; 579,633,380 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq114236 95.1 9e-15 seq114234 84.2 2e-11 seq1613 84.2 2e-11 >seq114236 Length=889 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || ||| | || || ||| |||||| | || ||||| | Sbjct 591 AATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACTATTACCCTCGAAGTCGAGGCTTC 532 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | | ||| || || || ||||| ||||| ||||| |||| || Sbjct 531 AGACACTATCGATAAT--GTGAAGCAGAAAATCCAGGACAAGGAAGGCATTCCTCCCGAT 474 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || |||||||| || |||||||| |||| |||| | ||| ||| Sbjct 473 CAGCAGCGTCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACTCTNAGCGACTAC 414 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||| |||||||| |||||| || | ||| | || || Sbjct 413 AACATCCAAAAAGAGTCTACTTTGCACTTGGTTCTGAGATTGAGAGGAGG 364 >seq114234 Length=910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||||||| | || || ||| ||||| | || ||||| | Sbjct 527 AATGCAAATCTTCGTGAAAACTTTGACAGGCAAAACCATTACTTTGGAGGTCGAGGCTTC 586 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| || || || || |||||||| |||| || Sbjct 587 TGACACCATTGATAAT--GTCAAGCAGAAGATTCAAGATAAAGAAGGCATTCCTCCCGAT 644 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || |||||||| || |||||||| || | |||| | ||| ||| Sbjct 645 CAACAGCGTCTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACTCTCAGCGACTAC 704 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||| |||||||| ||||| Sbjct 705 AACATCCAAAAAGAGTCTACTTTGCACTTGGT 736 >seq1613 Length=19885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||| ||||| || || ||| ||||| |||| ||||| | Sbjct 382 AATGCAGATTTTCGTGAAGACTCTGACCGGAAAAACCATTACTCTTGAAGTCGAGGCTTC 441 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| ||||| || ||||| || |||||||| |||| || Sbjct 442 CGACACCATCGATAAT--GTCAAGCAGAAAATTCAGGATAAAGAAGGGATTCCTCCTGAT 499 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | || || || || || |||||||| || | || | | | || ||| Sbjct 500 CAGCAACGTCTTATCTTCGCTGGTAAGCAATTGGAGGATGGCCGTACCCTCAGTGACTAC 559 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||||||||| |||||||| ||||| Sbjct 560 AATATCCAAAAAGAATCTACTTTGCACTTGGT 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355341348386853